Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   EL276_RS05005 Genome accession   NZ_LR134516
Coordinates   1092799..1096416 (+) Length   1205 a.a.
NCBI ID   WP_126304614.1    Uniprot ID   A0A3S4Y805
Organism   Neisseria animaloris strain NCTC12227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1087799..1101416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL276_RS04990 (NCTC12227_01009) - 1088735..1090363 (+) 1629 WP_085363904.1 CTP synthase -
  EL276_RS04995 (NCTC12227_01010) - 1090464..1091552 (-) 1089 WP_126304610.1 metallophosphoesterase -
  EL276_RS05000 (NCTC12227_01011) - 1091765..1092664 (+) 900 WP_126304612.1 Dyp-type peroxidase -
  EL276_RS05005 (NCTC12227_01012) recB 1092799..1096416 (+) 3618 WP_126304614.1 exodeoxyribonuclease V subunit beta Machinery gene
  EL276_RS05010 (NCTC12227_01014) - 1096788..1097033 (-) 246 WP_126304616.1 glutaredoxin family protein -
  EL276_RS05015 (NCTC12227_01015) - 1097171..1098301 (+) 1131 WP_107928131.1 M14-type cytosolic carboxypeptidase -
  EL276_RS05020 (NCTC12227_01016) - 1098537..1099496 (+) 960 WP_126304618.1 DMT family transporter -
  EL276_RS05025 (NCTC12227_01017) - 1099548..1100519 (-) 972 WP_126304620.1 tRNA dihydrouridine synthase -

Sequence

Protein


Download         Length: 1205 a.a.        Molecular weight: 136069.38 Da        Isoelectric Point: 5.7033

>NTDB_id=1123728 EL276_RS05005 WP_126304614.1 1092799..1096416(+) (recB) [Neisseria animaloris strain NCTC12227]
MPTRHQPFNPLTIPIQGTNLIEASAGTGKTYGIAALFTRLVVLEKMPVESILVVTFTKAATAELKTRLRARLDDVLRALE
DNPNAAHDSDGLQTYCEREHKDDGFILPLLTQALSQEPQARLIVRLKAAIGQFDNAAIYTIHGFCQRLLRDYAFLCQVPF
DVELAEDNRERLLVPAEDFWRANVSDNPLLARLVFKYKQTPQTVLAKIKKFISRPYLVFRRPRTDLTAATATLQQTWQKV
RENLTALTETFWRVHPNLNGNSYRKTSFENLFAELRHAAEYDLLPAFNEKLAMFAADVLESKTKKHAAPDLAAYAGLQML
ANLGRDLAAVGEEEQNALTALQLDLLEHINNALAEQKKSRHERSFDDLLLDVHHALTQSPHRRTLAETVADNWKVALIDE
FQDTDPLQYEIFSRLFIRQGNPLFLVGDPKQAIYSFRGADIYAYLQAAEDAEHHYTLATNYRSHAKLINGIGALFKQKNR
PFVLEHINYTDVAASREAGRLKPARPAIQVRWLNRNDDDSTAKEKLRRRAAEYCADEIAQALNEAAAGRLNYQKNADSEA
RPLQSGQIAVLVRTHNEGLLISQELKKRNVQSVIRSRESVFATPEAEAVAALLGFWLQPQQTEPLRFVLGSILFQQTAAE
LYTLNHDENALLAWIASAETAAATWRQHGIYAAMQQFAARHGIETRLLKSGNERSLTNYHQILEHLAEEDEQSHTPSSLH
QWLLEQIQAAQESGGSENNILRLESDDALVKIVTMHAAKGLQYPLVYCPFVWDAADNKPAEWQILHQNRQAVLLAEHQLD
DTDTELLADEELAERLRLLYVALTRAEEQLNIYAAYCNDTTDNTFAYLLEGGRQATRSENKAAYEAAKNEEGVEMLKANW
QRFINNTSKNTEFVFTEDAPPQAVYHGIQFSDGLYQAASIPERTFELIRHTSFTGLSRHTRSRDSERDELQPAIDPAESS
VVRPSEKMPSENSQTDGIHAFPRGTNAGVCLHEILEHFDFAASETAQAEAVTTALARYGFDDTWLPAVNVMLEHVRQTPL
TGKYALADIAADRRLPEMAFTLYMHDFNLNRLREWFARPHLNLPSECVAAAQQLDFAAVKGFLNGFIDMVYQDSDGLVCV
IDYKSNRLGDTATDYTQTAMNEAMAEHHYYLQALIYAVAVARYFKIRGLPQPQIAVRYLFLRGLDGSGNGIWAWNLDSSD
LAEWL

Nucleotide


Download         Length: 3618 bp        

>NTDB_id=1123728 EL276_RS05005 WP_126304614.1 1092799..1096416(+) (recB) [Neisseria animaloris strain NCTC12227]
ATGCCAACCCGCCACCAACCCTTCAACCCGCTCACCATTCCCATACAAGGTACCAATCTGATCGAAGCCTCCGCCGGCAC
GGGTAAAACCTACGGCATTGCCGCGCTGTTCACGCGGCTGGTGGTGCTCGAAAAAATGCCGGTCGAAAGCATATTAGTAG
TTACGTTTACCAAAGCCGCCACCGCCGAATTGAAAACCCGTTTGCGCGCACGTTTGGACGACGTTCTGCGGGCATTGGAA
GACAATCCGAATGCCGCACACGATTCAGACGGCCTGCAAACCTATTGCGAACGCGAGCATAAAGATGACGGCTTTATCCT
GCCGCTGCTTACCCAAGCCTTAAGCCAAGAACCGCAAGCACGGCTGATTGTGCGCTTGAAAGCCGCCATCGGCCAATTCG
ACAATGCCGCGATTTACACCATCCACGGCTTCTGCCAACGGCTGTTGCGCGATTACGCCTTTCTCTGTCAAGTGCCGTTT
GATGTCGAACTCGCCGAAGACAACCGCGAACGCCTGCTTGTGCCCGCCGAAGACTTCTGGCGCGCAAACGTGTCCGACAA
TCCCCTGTTGGCGCGGTTGGTATTCAAATACAAACAAACCCCGCAAACCGTGTTGGCAAAGATAAAAAAATTCATCAGCC
GTCCGTATTTGGTTTTCAGACGGCCTCGAACGGATTTGACGGCTGCAACGGCAACTTTGCAACAAACATGGCAAAAAGTG
CGTGAAAACCTAACCGCGCTCACCGAAACATTTTGGCGGGTACATCCCAACCTGAACGGCAACAGCTACCGCAAAACCTC
TTTTGAAAACCTGTTTGCCGAGCTGCGGCACGCTGCCGAATACGATCTTTTGCCTGCATTTAACGAAAAATTGGCGATGT
TTGCCGCCGACGTGTTGGAAAGCAAAACCAAAAAACACGCCGCACCCGACCTTGCCGCCTATGCCGGCCTGCAAATGCTC
GCCAATCTGGGCCGCGATCTTGCCGCCGTCGGGGAAGAAGAACAAAACGCCCTTACCGCCTTACAGCTCGATTTGCTCGA
ACACATCAACAACGCCTTGGCCGAACAAAAAAAATCCCGCCACGAACGCAGCTTCGACGACTTGCTGCTGGATGTTCACC
ACGCGCTCACGCAAAGCCCGCACCGCCGTACTTTGGCCGAAACCGTGGCGGACAACTGGAAAGTGGCGCTGATAGATGAA
TTCCAAGACACCGACCCGCTGCAATACGAAATTTTCAGCCGCCTGTTTATCCGGCAAGGCAACCCGCTGTTTCTGGTGGG
CGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCCGACATTTACGCCTATCTCCAAGCCGCCGAAGATGCCGAACACC
ACTACACGCTTGCCACCAACTACCGCAGCCATGCCAAGCTGATTAACGGCATCGGTGCATTGTTCAAACAAAAAAACCGC
CCCTTCGTGCTGGAACACATCAATTACACCGATGTCGCCGCCTCGCGCGAAGCAGGCCGTCTGAAACCCGCCCGCCCCGC
GATACAGGTGCGCTGGCTTAACCGTAACGACGACGATTCCACTGCCAAAGAAAAGCTGCGCCGCCGTGCTGCCGAATATT
GTGCCGACGAAATCGCCCAAGCCCTCAACGAAGCGGCGGCAGGCCGTCTGAATTATCAGAAAAACGCCGATTCCGAGGCA
CGCCCGTTGCAATCGGGGCAGATCGCCGTACTGGTACGCACCCATAACGAAGGGCTGCTGATTTCTCAAGAACTGAAAAA
GCGTAACGTGCAAAGCGTTATCCGCAGCCGCGAATCGGTATTCGCCACCCCGGAAGCCGAAGCCGTAGCCGCCTTGCTCG
GTTTCTGGCTGCAACCGCAGCAAACCGAACCGTTGCGTTTCGTGCTCGGCAGTATTTTGTTTCAACAAACCGCGGCGGAA
CTCTACACCCTCAATCACGACGAAAACGCCTTGCTAGCATGGATTGCATCCGCCGAAACCGCCGCAGCCACATGGCGGCA
ACACGGCATTTACGCCGCCATGCAGCAGTTTGCCGCACGGCACGGTATAGAAACACGATTGCTTAAATCAGGCAACGAAC
GCAGCCTAACCAACTACCACCAGATTCTCGAACATCTGGCCGAAGAAGACGAACAAAGCCATACACCTTCGTCGCTGCAC
CAGTGGCTGTTGGAACAGATTCAGGCCGCACAAGAAAGCGGCGGCAGCGAAAACAACATTTTGCGGTTGGAAAGCGATGA
TGCCTTGGTCAAAATCGTTACCATGCACGCCGCCAAAGGTTTGCAGTATCCGCTGGTGTATTGCCCGTTCGTGTGGGATG
CCGCCGACAACAAACCCGCCGAATGGCAGATTCTTCATCAAAACCGGCAGGCGGTATTGCTTGCCGAACACCAGCTCGAC
GACACCGATACCGAGTTGCTGGCCGACGAAGAACTCGCCGAACGTCTGCGCCTGCTCTATGTCGCCCTTACCCGCGCCGA
AGAGCAGCTCAATATCTACGCCGCCTATTGCAACGACACCACCGACAACACTTTCGCTTATTTATTGGAAGGCGGCCGAC
AGGCCACCCGCAGCGAAAACAAAGCGGCATACGAAGCGGCCAAAAACGAAGAAGGCGTGGAGATGCTGAAAGCAAACTGG
CAGCGTTTTATTAACAATACCTCTAAAAACACCGAATTTGTTTTCACGGAGGATGCTCCTCCCCAAGCCGTATATCACGG
CATTCAGTTTTCAGACGGCCTCTATCAAGCGGCAAGCATTCCCGAAAGAACTTTCGAGCTGATACGCCACACCAGCTTTA
CCGGCTTGAGCCGCCACACCCGCAGCCGCGATTCCGAACGCGACGAACTGCAACCCGCCATCGATCCCGCCGAAAGCAGC
GTAGTCAGGCCGTCTGAAAAGATGCCGTCTGAAAACAGCCAAACAGACGGCATCCACGCCTTTCCGCGCGGCACCAATGC
CGGTGTGTGCCTGCATGAAATACTCGAACATTTCGACTTCGCCGCCTCCGAAACCGCCCAAGCCGAAGCCGTTACCACCG
CCCTTGCCCGTTACGGCTTCGACGATACTTGGCTGCCTGCCGTCAACGTCATGCTCGAGCATGTCCGCCAAACCCCGCTT
ACCGGCAAATACGCCCTTGCCGATATTGCCGCCGACCGCCGCCTGCCCGAAATGGCTTTCACGCTCTACATGCATGATTT
CAACCTGAACCGCCTGCGCGAATGGTTTGCCCGCCCGCATCTCAACTTGCCATCCGAATGCGTTGCCGCCGCGCAACAAC
TCGACTTTGCCGCTGTGAAAGGTTTTCTCAACGGCTTTATCGACATGGTGTATCAGGATTCAGACGGCCTCGTTTGCGTT
ATCGACTATAAATCCAACCGCTTAGGCGATACCGCCACCGACTACACCCAAACGGCCATGAACGAAGCAATGGCCGAACA
CCACTACTACCTGCAAGCCCTGATTTACGCCGTCGCCGTCGCCCGCTATTTCAAGATACGCGGCCTTCCGCAGCCCCAAA
TCGCCGTGCGTTACCTGTTCCTGCGCGGCTTGGACGGCAGCGGCAACGGCATTTGGGCATGGAATTTAGACAGCTCGGAT
CTGGCGGAATGGTTATAA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(10-451)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(988-1181)

UvrD-like helicase C-terminal domain (UvrD_C)

(455-833)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4Y805

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.448

100

0.605

Multiple sequence alignment