Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EL276_RS03245 Genome accession   NZ_LR134516
Coordinates   735571..736374 (+) Length   267 a.a.
NCBI ID   WP_107928331.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12227     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 730571..741374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL276_RS03215 (NCTC12227_00658) - 730919..731482 (-) 564 WP_085390440.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  EL276_RS03220 (NCTC12227_00659) lpxK 731865..732893 (+) 1029 WP_126304234.1 tetraacyldisaccharide 4'-kinase -
  EL276_RS03225 (NCTC12227_00660) - 732893..733435 (+) 543 WP_232012728.1 DUF2059 domain-containing protein -
  EL276_RS03230 (NCTC12227_00661) - 733452..733634 (+) 183 WP_126304236.1 Trm112 family protein -
  EL276_RS03235 (NCTC12227_00662) kdsB 733631..734389 (+) 759 WP_107879270.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EL276_RS03240 (NCTC12227_00663) rluD 734451..735572 (-) 1122 WP_126304238.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EL276_RS03245 (NCTC12227_00664) comL 735571..736374 (+) 804 WP_107928331.1 outer membrane protein assembly factor BamD Machinery gene
  EL276_RS03250 (NCTC12227_00665) - 736496..737044 (+) 549 WP_107928406.1 YqgE/AlgH family protein -
  EL276_RS03255 (NCTC12227_00666) ruvX 737037..737495 (+) 459 WP_126304240.1 Holliday junction resolvase RuvX -
  EL276_RS03260 (NCTC12227_00667) pnp 737783..739918 (+) 2136 WP_107928329.1 polyribonucleotide nucleotidyltransferase -
  EL276_RS03265 (NCTC12227_00668) hemF 740023..740928 (+) 906 WP_126304242.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30981.94 Da        Isoelectric Point: 9.1288

>NTDB_id=1123720 EL276_RS03245 WP_107928331.1 735571..736374(+) (comL) [Neisseria animaloris strain NCTC12227]
MKKILLVVALGFALGGCASTGTVDKDAQITQDWTVEKLYAEAQDELNSNNYTRAVKLYEILKSRFPNGRYAQQAQLDTAY
AYYKDDEPEKALAAIDRFQRNHPQHPNMDYALYLRGLVLFNEDKSFLNKLASQDWSDRDPKANREAYQAFSQLVSQYPNS
KYVGDATERMTKLVDALGGNEISVARYYMKRGAYLAAANRAQKVVQQYQNTRFVEESLAIMELAYRRINQPQLADDARRV
LEKNFPNSPYLQKEWRLDGIPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1123720 EL276_RS03245 WP_107928331.1 735571..736374(+) (comL) [Neisseria animaloris strain NCTC12227]
ATGAAAAAAATTCTTTTAGTAGTTGCTTTAGGTTTTGCCTTGGGCGGTTGCGCTTCCACGGGTACGGTCGATAAAGATGC
CCAGATCACTCAAGATTGGACGGTGGAAAAACTGTATGCCGAAGCTCAAGACGAATTAAACAGCAACAATTATACGCGAG
CCGTTAAATTATATGAAATTTTGAAATCGCGTTTTCCCAACGGACGTTATGCGCAACAGGCACAGTTGGATACAGCCTAC
GCCTACTATAAAGATGATGAGCCGGAAAAAGCACTGGCGGCCATCGACCGCTTCCAACGCAACCATCCGCAGCATCCCAA
TATGGATTACGCTTTGTACCTTAGAGGCTTGGTGTTGTTTAACGAAGATAAATCTTTCCTAAACAAGTTGGCTTCGCAAG
ACTGGTCCGATCGCGACCCTAAAGCCAACCGTGAAGCGTATCAGGCTTTCTCGCAGTTGGTTTCCCAATACCCCAACAGC
AAATATGTAGGCGATGCTACCGAGCGCATGACTAAATTGGTTGATGCCTTGGGCGGCAACGAAATTTCCGTAGCCCGCTA
TTACATGAAGCGCGGTGCTTACTTGGCTGCGGCTAACCGTGCACAAAAAGTGGTGCAGCAATATCAAAACACCCGTTTTG
TGGAAGAATCGCTGGCTATTATGGAGCTGGCTTACCGCCGTATCAACCAACCCCAATTGGCAGACGATGCCCGCCGTGTT
TTGGAGAAAAACTTCCCCAACAGTCCATATCTGCAAAAAGAATGGCGTTTGGACGGTATACCTTGGTGGCGCTATTGGAA
GTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

80.075

99.625

0.798
  comL Neisseria gonorrhoeae MS11

78.571

99.625

0.783

Multiple sequence alignment