Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   EL276_RS02815 Genome accession   NZ_LR134516
Coordinates   649278..651047 (+) Length   589 a.a.
NCBI ID   WP_126304144.1    Uniprot ID   A0A448UAG1
Organism   Neisseria animaloris strain NCTC12227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 644278..656047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL276_RS02795 (NCTC12227_00573) greA 645116..645592 (+) 477 WP_085390518.1 transcription elongation factor GreA -
  EL276_RS02800 (NCTC12227_00574) tadA 645674..646390 (-) 717 WP_126304140.1 tRNA adenosine(34) deaminase TadA -
  EL276_RS02805 (NCTC12227_00575) nadE 646490..647281 (-) 792 WP_107879332.1 NAD(+) synthase -
  EL276_RS02810 (NCTC12227_00576) - 647657..649198 (+) 1542 WP_126304142.1 OFA family MFS transporter -
  EL276_RS02815 (NCTC12227_00577) recD 649278..651047 (+) 1770 WP_126304144.1 exodeoxyribonuclease V subunit alpha Machinery gene
  EL276_RS02820 (NCTC12227_00578) - 651074..651712 (+) 639 WP_126304146.1 LysE/ArgO family amino acid transporter -
  EL276_RS02825 (NCTC12227_00579) purF 651808..653352 (-) 1545 WP_126304148.1 amidophosphoribosyltransferase -
  EL276_RS02830 (NCTC12227_00580) - 653373..653870 (-) 498 WP_107928378.1 CvpA family protein -
  EL276_RS02835 (NCTC12227_00581) - 653873..655048 (-) 1176 WP_126304150.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 64320.04 Da        Isoelectric Point: 5.5188

>NTDB_id=1123719 EL276_RS02815 WP_126304144.1 649278..651047(+) (recD) [Neisseria animaloris strain NCTC12227]
MTTALPSDSDQAAAEAAVAFLERHAPADAAVAAPYIPRLFAALQDGHSFIWLDNREAAELAAASNVVGKGEGMPLVLEGK
RLFLGRMWQLERDLAAEIVRLAVAEVEAVDWLQAGRNLAEWFGEKGSEGQRDAAALALLQPFMLISGGPGTGKTTTVAKL
LGLLCGSNTQLPRIALAAPTGKAAAHMARALHKALNRFELPEKAKRHLLQLEGQTVHRLLKLRPPQMQPLFNGEQPLPLD
ILVVDEASMLDVSLLLHLLRAVPQGCRVILLGDENQLPSVGAGAVLAELAQETVLDSDTAQELAAMLPQHGFTVADHPPP
LSQNVGRLKTSHRFGENSGIGCLARAVVEGDAETAWAQFACFPDELEVRTGRSRQQAEWLYGKHADYWQAVDAGDVKKAF
EHQTDAVVLAAWRDDAAAFNEEYRRCLQRYGRAGADVPWFAGQAVMITRNDYALDLFNGDVGLVMPDDTAPDMLAAYFPS
VEGYRKIALSRLPEHETAFALTVHKSQGSEYREVWLLPPSVENRGSAEGFSRALLYTAVTRARGRFVFWGTQDGFQTACR
ESCNRRSALREMIAERFADYAENGERAGR

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=1123719 EL276_RS02815 WP_126304144.1 649278..651047(+) (recD) [Neisseria animaloris strain NCTC12227]
ATGACTACTGCTTTGCCATCCGATTCAGACCAAGCCGCCGCCGAAGCTGCCGTTGCTTTTCTCGAACGCCATGCTCCCGC
CGATGCCGCCGTTGCCGCTCCTTATATTCCGCGCCTGTTTGCCGCCTTGCAGGACGGACATTCCTTTATTTGGTTGGACA
ACCGCGAAGCGGCGGAGTTGGCGGCGGCCTCAAATGTGGTTGGCAAGGGAGAGGGCATGCCGCTGGTGTTGGAAGGAAAA
CGGCTTTTTCTCGGCAGAATGTGGCAGCTCGAACGCGATTTGGCGGCGGAAATCGTGCGGTTGGCGGTAGCGGAAGTTGA
AGCGGTAGACTGGTTGCAGGCAGGGCGGAACTTGGCGGAATGGTTCGGTGAAAAAGGCAGCGAAGGCCAACGCGATGCAG
CGGCTTTGGCGTTATTACAGCCGTTTATGCTGATCAGTGGTGGCCCCGGCACGGGTAAAACCACTACGGTGGCCAAGCTG
CTTGGCCTTTTGTGCGGTAGCAATACGCAACTGCCCCGAATCGCACTGGCGGCACCCACGGGTAAAGCTGCCGCGCACAT
GGCACGGGCGTTGCATAAAGCGTTAAACCGATTTGAACTGCCAGAAAAAGCTAAGCGGCATTTGCTGCAACTCGAAGGCC
AAACCGTTCACCGCCTGCTCAAGTTAAGGCCGCCGCAGATGCAGCCGCTGTTTAATGGTGAACAACCGTTACCGCTGGAT
ATTCTGGTGGTAGATGAAGCCTCGATGTTGGATGTGTCGCTGCTATTGCATTTGCTGCGTGCCGTGCCTCAGGGGTGCCG
TGTGATTTTGCTGGGCGATGAAAACCAGTTACCTTCGGTGGGTGCGGGTGCGGTGCTGGCGGAATTGGCACAAGAAACGG
TGCTGGATTCGGATACGGCGCAAGAGCTTGCCGCCATGTTGCCGCAGCACGGATTTACCGTTGCCGATCATCCGCCGCCG
TTATCGCAGAACGTAGGCCGTCTGAAAACTAGCCACCGTTTTGGTGAAAACAGCGGTATCGGCTGTTTGGCGCGGGCGGT
AGTGGAGGGTGATGCTGAAACCGCATGGGCGCAGTTTGCCTGTTTCCCTGACGAGTTGGAAGTACGCACGGGCAGAAGCA
GGCAGCAGGCGGAGTGGCTGTACGGCAAGCACGCCGATTATTGGCAGGCTGTCGACGCGGGCGATGTGAAAAAGGCGTTT
GAACATCAAACCGACGCAGTAGTGTTGGCGGCATGGCGCGATGATGCGGCGGCCTTTAACGAGGAATACCGCCGCTGCCT
GCAACGCTACGGGCGTGCCGGTGCCGATGTGCCGTGGTTTGCGGGGCAGGCGGTGATGATTACGCGTAATGATTACGCAC
TGGACTTGTTTAATGGCGATGTCGGTTTGGTAATGCCTGATGATACCGCTCCTGACATGTTGGCAGCTTATTTTCCAAGT
GTGGAAGGCTACCGCAAAATCGCCCTCAGCCGTCTGCCTGAACACGAAACCGCATTTGCGCTTACCGTGCATAAAAGCCA
AGGTTCGGAGTATCGCGAAGTGTGGCTGCTGCCGCCTTCGGTAGAAAATCGCGGCAGTGCGGAAGGTTTTTCCAGAGCCT
TGCTTTATACCGCCGTTACCCGTGCCCGCGGGCGGTTTGTGTTTTGGGGCACTCAGGACGGTTTTCAGACGGCCTGCCGG
GAAAGCTGCAACAGGCGGAGTGCTTTGCGTGAAATGATAGCCGAACGCTTTGCAGATTATGCGGAAAACGGCGAGAGAGC
CGGACGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(127-293)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(498-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A448UAG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

59.469

95.925

0.57

Multiple sequence alignment