Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   EL254_RS06565 Genome accession   NZ_LR134512
Coordinates   1257854..1259080 (-) Length   408 a.a.
NCBI ID   WP_126418234.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NCTC13949     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1252854..1264080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL254_RS06535 (NCTC13949_01305) - 1253728..1255104 (-) 1377 WP_126418217.1 amino acid permease -
  EL254_RS06540 (NCTC13949_01306) - 1255234..1255884 (-) 651 WP_000120090.1 HXXEE domain-containing protein -
  EL254_RS10690 (NCTC13949_01307) - 1256042..1256365 (-) 324 WP_001867206.1 HXXEE domain-containing protein -
  EL254_RS06555 (NCTC13949_01308) - 1256637..1257266 (+) 630 WP_000140673.1 TetR/AcrR family transcriptional regulator -
  EL254_RS06560 (NCTC13949_01309) yihA 1257247..1257843 (-) 597 WP_000796925.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EL254_RS06565 (NCTC13949_01310) clpX 1257854..1259080 (-) 1227 WP_126418234.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EL254_RS06575 (NCTC13949_01312) - 1259298..1259792 (-) 495 WP_000166043.1 dihydrofolate reductase -
  EL254_RS06580 (NCTC13949_01313) - 1259872..1260711 (-) 840 WP_000158597.1 thymidylate synthase -
  EL254_RS06585 (NCTC13949_01314) - 1260865..1262037 (+) 1173 WP_001873466.1 hydroxymethylglutaryl-CoA synthase -
  EL254_RS06590 (NCTC13949_01315) - 1262039..1263322 (+) 1284 WP_000161688.1 hydroxymethylglutaryl-CoA reductase, degradative -
  EL254_RS06595 (NCTC13949_01316) - 1263414..1263863 (+) 450 WP_001039193.1 DUF1836 domain-containing protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44836.21 Da        Isoelectric Point: 4.4094

>NTDB_id=1123633 EL254_RS06565 WP_126418234.1 1257854..1259080(-) (clpX) [Streptococcus agalactiae strain NCTC13949]
MAGNRNNDMNVYCSFCGKSQDEVKKIIAGNGVFICNECVALSQEIIKEELAEEVLADLAEVPKPKELLEILNQYVVGQDR
AKRALAVAVYNHYKRVSYTESSDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQINTKN
ILFIVGGAFDGIEDLVKQRLGEKIIGFGQTSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALELLTAEDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALLAIADKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVEGT
DNPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1123633 EL254_RS06565 WP_126418234.1 1257854..1259080(-) (clpX) [Streptococcus agalactiae strain NCTC13949]
ATGGCTGGGAATCGTAATAACGATATGAATGTCTATTGTTCATTTTGTGGCAAAAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAATGGTGTTTTCATTTGTAATGAATGTGTGGCCTTATCACAAGAAATTATTAAGGAAGAATTAGCTGAGGAAG
TACTTGCTGATTTAGCAGAAGTACCAAAACCTAAGGAACTATTAGAAATATTAAATCAATATGTTGTAGGGCAAGATCGT
GCTAAACGTGCTTTAGCAGTTGCTGTCTACAATCATTACAAGCGTGTTAGTTATACCGAGAGTAGTGACGATGATGTAGA
TTTGCAAAAATCCAACATTTTGATGATTGGTCCAACTGGCTCAGGAAAAACCTTCTTAGCACAAACACTAGCTAAAAGCC
TTAATGTACCGTTTGCTATTGCAGATGCGACTTCATTGACCGAAGCAGGATACGTTGGAGAAGATGTTGAGAATATTCTT
CTTAAATTGATTCAAGCTGCTGATTATAATGTCGAACGTGCTGAGCGTGGTATTATCTACGTTGATGAAATAGATAAAAT
TGCTAAGAAAGGCGAAAATGTTTCTATCACACGTGATGTATCTGGTGAAGGTGTACAGCAAGCCCTTCTTAAAATTATTG
AGGGTACGGTAGCAAGTGTTCCCCCACAGGGTGGGCGTAAACATCCTAACCAAGAAATGATTCAAATTAATACCAAGAAC
ATCCTTTTTATTGTCGGTGGTGCTTTTGATGGTATTGAAGACCTTGTGAAGCAACGTTTAGGCGAAAAAATTATTGGTTT
TGGACAGACAAGCCGCAAAATTGATGACAACGCTTCTTATATGCAAGAGATAATTTCTGAGGATATTCAAAAGTTTGGAC
TGATTCCAGAGTTTATTGGCCGTTTACCAGTAGTTGCAGCGTTAGAACTTCTTACTGCAGAAGATCTGGTTCGTATTCTG
ACAGAACCACGCAATGCTTTGGTTAAACAATACCAAACCTTATTATCTTATGATGGTGTAGAATTGGAATTTGATCAGGA
TGCTCTATTGGCTATCGCTGATAAGGCTATCGAGCGCAAGACTGGTGCACGTGGTTTACGTTCTATTATTGAAGAAACGA
TGCTTGATATCATGTTTGAAATTCCAAGCCAAGAAGATGTAACAAAAGTTCGTATCACAAAGGCTGCTGTTGAGGGTACT
GACAATCCTGTTTTAGAGACGGCTTAG

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

90.465

100

0.907
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.75

98.039

0.566

Multiple sequence alignment