Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   EL229_RS07220 Genome accession   NZ_LR134505
Coordinates   1408723..1409034 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni strain NCTC12109     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1403723..1414034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL229_RS07200 (NCTC12109_01456) ctsE 1404592..1406151 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  EL229_RS07205 (NCTC12109_01457) ctsX 1406141..1406728 (-) 588 WP_002851370.1 membrane protein Machinery gene
  EL229_RS07210 (NCTC12109_01458) ctsP 1406732..1407340 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  EL229_RS07215 (NCTC12109_01459) ctsD 1407333..1408745 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  EL229_RS07220 (NCTC12109_01460) ctsR 1408723..1409034 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  EL229_RS07225 (NCTC12109_01461) nifJ 1409058..1412618 (-) 3561 WP_002871858.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  EL229_RS07230 (NCTC12109_01462) - 1412711..1413352 (-) 642 WP_002871857.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=1123496 EL229_RS07220 WP_002855438.1 1408723..1409034(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain NCTC12109]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1123496 EL229_RS07220 WP_002855438.1 1408723..1409034(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain NCTC12109]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment