Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   EL229_RS07210 Genome accession   NZ_LR134505
Coordinates   1406732..1407340 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni subsp. jejuni strain NCTC12109     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1401732..1412340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL229_RS07185 (NCTC12109_01453) - 1401889..1402653 (+) 765 WP_002871862.1 TIGR02757 family protein -
  EL229_RS07190 (NCTC12109_01454) - 1402657..1403421 (+) 765 WP_002871861.1 TSUP family transporter -
  EL229_RS07195 (NCTC12109_01455) ctsF 1403414..1404595 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  EL229_RS07200 (NCTC12109_01456) ctsE 1404592..1406151 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  EL229_RS07205 (NCTC12109_01457) ctsX 1406141..1406728 (-) 588 WP_002851370.1 membrane protein Machinery gene
  EL229_RS07210 (NCTC12109_01458) ctsP 1406732..1407340 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  EL229_RS07215 (NCTC12109_01459) ctsD 1407333..1408745 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  EL229_RS07220 (NCTC12109_01460) ctsR 1408723..1409034 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=1123494 EL229_RS07210 WP_002851464.1 1406732..1407340(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain NCTC12109]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1123494 EL229_RS07210 WP_002851464.1 1406732..1407340(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain NCTC12109]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment