Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   EL229_RS02965 Genome accession   NZ_LR134505
Coordinates   553215..553865 (-) Length   216 a.a.
NCBI ID   WP_002852117.1    Uniprot ID   Q0PAS3
Organism   Campylobacter jejuni subsp. jejuni strain NCTC12109     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 548215..558865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL229_RS02930 (NCTC12109_00592) - 548593..549597 (+) 1005 WP_002852264.1 membrane protein -
  EL229_RS02935 (NCTC12109_00593) tlyA 549594..550355 (+) 762 WP_002852328.1 TlyA family RNA methyltransferase -
  EL229_RS02940 (NCTC12109_00594) ribF 550321..551175 (+) 855 WP_002872056.1 bifunctional riboflavin kinase/FAD synthetase -
  EL229_RS02945 (NCTC12109_00595) cmoA 551162..551872 (+) 711 WP_072223314.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  EL229_RS02950 (NCTC12109_00596) - 551862..552083 (-) 222 WP_002859102.1 EexN family lipoprotein -
  EL229_RS02955 (NCTC12109_00597) - 552080..552514 (-) 435 WP_002855128.1 EexN family lipoprotein -
  EL229_RS02960 (NCTC12109_00598) - 552572..553204 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  EL229_RS02965 (NCTC12109_00599) CJE0566 553215..553865 (-) 651 WP_002852117.1 DNA/RNA non-specific endonuclease Regulator
  EL229_RS02970 (NCTC12109_00600) nth 553862..554488 (-) 627 WP_002852225.1 endonuclease III -
  EL229_RS02975 (NCTC12109_00601) peb4 554569..555390 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  EL229_RS02980 (NCTC12109_00602) fbaA 555390..556454 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  EL229_RS02985 (NCTC12109_00603) - 556549..557991 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25472.10 Da        Isoelectric Point: 9.6573

>NTDB_id=1123476 EL229_RS02965 WP_002852117.1 553215..553865(-) (CJE0566) [Campylobacter jejuni subsp. jejuni strain NCTC12109]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1123476 EL229_RS02965 WP_002852117.1 553215..553865(-) (CJE0566) [Campylobacter jejuni subsp. jejuni strain NCTC12109]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment