Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   EL232_RS05640 Genome accession   NZ_LR134498
Coordinates   1011972..1013531 (+) Length   519 a.a.
NCBI ID   WP_002867246.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC13265     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1006972..1018531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL232_RS05620 (NCTC13265_01136) ctsR 1009089..1009400 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  EL232_RS05625 (NCTC13265_01137) ctsD 1009378..1010790 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  EL232_RS05630 (NCTC13265_01138) ctsP 1010783..1011391 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  EL232_RS05635 (NCTC13265_01139) ctsX 1011395..1011982 (+) 588 WP_002867245.1 hypothetical protein Machinery gene
  EL232_RS05640 (NCTC13265_01140) ctsE 1011972..1013531 (+) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  EL232_RS05645 (NCTC13265_01141) ctsF 1013528..1014709 (+) 1182 WP_002867247.1 type II secretion system F family protein Machinery gene
  EL232_RS05650 (NCTC13265_01142) - 1014702..1015466 (-) 765 WP_002855821.1 TSUP family transporter -
  EL232_RS05655 (NCTC13265_01143) - 1015470..1016234 (-) 765 WP_011049985.1 TIGR02757 family protein -
  EL232_RS05660 (NCTC13265_01144) flgK 1016251..1018077 (-) 1827 WP_126418082.1 flagellar hook-associated protein FlgK -
  EL232_RS05665 (NCTC13265_01145) - 1018087..1018521 (-) 435 WP_002779263.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60144.92 Da        Isoelectric Point: 5.5691

>NTDB_id=1123348 EL232_RS05640 WP_002867246.1 1011972..1013531(+) (ctsE) [Campylobacter jejuni strain NCTC13265]
MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFNKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENYKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILKKILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLVQQILLNSKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLACAIRENQD
KTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=1123348 EL232_RS05640 WP_002867246.1 1011972..1013531(+) (ctsE) [Campylobacter jejuni strain NCTC13265]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCACTAAATTTAA
TATCACTTCTTGGGATTTTTTTAACAAATTAGCAAATTTTTGTAATTTACATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCCAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGCATTAAGCTTA
GACTTGAATGGCAAGAAAATTACAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAGGCAAGAAATGATGATGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATATTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACACAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGAGAAAGTGTTGTTATAAGAATTTTAAAACATGATAAAGAAATTTTGGATTTGTATAAACTAAATCT
TGGAAATAAAAATTTAGAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAATGATTTTATTAACCGGTCCTACAGGTA
GTGGTAAAAGCACAACTTTATACGCGTGTTTAAATGAGTTGAAAAGTATTGAAAAAAAGATTATTTCCGCAGAAGATCCT
ATAGAATATAAAATTCCTTTAGTGCAGCAAATTTTGCTCAATTCAAAAGTTGGAGTCGAGTTTAATAGTGTTTTAAGAGC
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAGATATTGCACTTAAAGCTT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCGGCTTTGAGTCTTGTTATAGCACAGCGTTTGGTTAGAAAACTTTGTCCTTGGTGTAA
GCAAAAAAGCAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGTCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAGTGCTTAGAGATCAATGAAGATTTAGCTTGTGCAATTAGGGAAAATCAAGAT
AAAACGATTTTAATGGAGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

99.615

100

0.996

Multiple sequence alignment