Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   EL228_RS02890 Genome accession   NZ_LR134497
Coordinates   551054..551704 (-) Length   216 a.a.
NCBI ID   WP_004306726.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC13268     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 546054..556704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL228_RS02855 (NCTC13268_00593) - 546431..547435 (+) 1005 WP_079263877.1 hypothetical protein -
  EL228_RS02860 (NCTC13268_00594) tlyA 547432..548193 (+) 762 WP_002931934.1 TlyA family RNA methyltransferase -
  EL228_RS02865 (NCTC13268_00595) ribF 548159..549013 (+) 855 WP_032585920.1 bifunctional riboflavin kinase/FAD synthetase -
  EL228_RS02870 (NCTC13268_00596) cmoA 549000..549710 (+) 711 WP_079263875.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  EL228_RS02875 (NCTC13268_00597) - 549727..549921 (-) 195 WP_079263876.1 EexN family lipoprotein -
  EL228_RS02880 (NCTC13268_00598) - 549912..550352 (-) 441 WP_004306720.1 EexN family lipoprotein -
  EL228_RS02885 (NCTC13268_00599) - 550411..551043 (-) 633 WP_004306723.1 trimeric intracellular cation channel family protein -
  EL228_RS02890 (NCTC13268_00600) CJE0566 551054..551704 (-) 651 WP_004306726.1 DNA/RNA non-specific endonuclease Regulator
  EL228_RS02895 (NCTC13268_00601) nth 551701..552327 (-) 627 WP_004306729.1 endonuclease III -
  EL228_RS02900 (NCTC13268_00602) peb4 552408..553229 (+) 822 WP_004306734.1 peptidylprolyl isomerase PEB4 -
  EL228_RS02905 (NCTC13268_00603) fbaA 553229..554293 (+) 1065 WP_004306738.1 class II fructose-bisphosphate aldolase -
  EL228_RS02910 (NCTC13268_00604) - 554388..555830 (+) 1443 WP_126623810.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25475.19 Da        Isoelectric Point: 9.8188

>NTDB_id=1123311 EL228_RS02890 WP_004306726.1 551054..551704(-) (CJE0566) [Campylobacter jejuni strain NCTC13268]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYNKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1123311 EL228_RS02890 WP_004306726.1 551054..551704(-) (CJE0566) [Campylobacter jejuni strain NCTC13268]
ATGAAAATTTTCATCTTTTTGCTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACTCCGCAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTCCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACAATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.558

91.204

0.644
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment