Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL296_RS15725 Genome accession   NZ_LR134485
Coordinates   3127140..3127754 (-) Length   204 a.a.
NCBI ID   WP_048212109.1    Uniprot ID   A0A9Q7ZQA3
Organism   Citrobacter youngae strain NCTC13709     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3122140..3132754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL296_RS15710 (NCTC13709_03199) helD 3122364..3124418 (-) 2055 WP_124021543.1 DNA helicase IV -
  EL296_RS15715 (NCTC13709_03200) - 3124544..3124990 (+) 447 WP_005123514.1 YccF domain-containing protein -
  EL296_RS15720 (NCTC13709_03201) yccS 3125009..3127162 (+) 2154 WP_005123516.1 YccS family putative transporter -
  EL296_RS15725 (NCTC13709_03202) sxy/tfoX 3127140..3127754 (-) 615 WP_048212109.1 TfoX/Sxy family DNA transformation protein Regulator
  EL296_RS15730 (NCTC13709_03203) sulA 3127971..3128480 (+) 510 WP_040231828.1 SOS-induced cell division inhibitor SulA -
  EL296_RS15735 (NCTC13709_03204) ompA 3128834..3129883 (+) 1050 WP_048212110.1 porin OmpA -
  EL296_RS15740 (NCTC13709_03205) matP 3129982..3130434 (-) 453 WP_005123520.1 macrodomain Ter protein MatP -
  EL296_RS15745 (NCTC13709_03206) - 3130620..3132380 (+) 1761 WP_048212112.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23336.10 Da        Isoelectric Point: 9.6920

>NTDB_id=1123149 EL296_RS15725 WP_048212109.1 3127140..3127754(-) (sxy/tfoX) [Citrobacter youngae strain NCTC13709]
MKKLSYARIYKSQEYLASLGTIRYRSLFGGYSLTVEDTVFAMVASGELYLRACEQSAQYCVKHSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSRYSLDAALKEKQSRFAQHRLRGLPNMTFHLETLLNEAGIKDESTLRMLGAKMCWLKLRQVN
PALTVKILYALEGAIGGIHEAALPAIRRQELVEWVSSLTPEPVY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1123149 EL296_RS15725 WP_048212109.1 3127140..3127754(-) (sxy/tfoX) [Citrobacter youngae strain NCTC13709]
ATGAAAAAACTTTCTTATGCAAGGATCTATAAATCACAAGAATATCTGGCGTCATTGGGGACTATTCGTTATCGATCGCT
GTTTGGGGGTTATAGCCTGACGGTTGAGGACACGGTATTCGCCATGGTCGCCAGTGGCGAGTTATATCTTCGGGCCTGTG
AACAGAGTGCGCAGTACTGTGTAAAACATTCCCCTGTCTGGCTGACATTTATAAAACGTGGACGTCCGGTGGTGCTCAAT
TATTATCAGGTGAACGATACGCTGTGGCAAAACCAGCAACAACTGGTGTCGCTATCACGGTATTCACTGGATGCGGCGTT
AAAAGAAAAGCAAAGTCGTTTTGCACAGCATCGCCTGCGTGGACTGCCGAACATGACATTCCATCTGGAAACCCTGCTGA
ATGAAGCAGGTATAAAAGATGAAAGCACATTACGCATGTTGGGGGCAAAAATGTGCTGGTTGAAACTGCGACAGGTTAAT
CCCGCGCTGACGGTGAAAATACTCTATGCCCTTGAAGGCGCAATTGGGGGAATTCATGAGGCGGCGCTCCCGGCGATTCG
TCGCCAGGAGCTTGTGGAGTGGGTGAGTTCTCTTACGCCTGAACCGGTGTACTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.637

98.529

0.716

Multiple sequence alignment