Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL241_RS10515 Genome accession   NZ_LR134483
Coordinates   2143407..2145215 (-) Length   602 a.a.
NCBI ID   WP_003754502.1    Uniprot ID   -
Organism   Listeria grayi strain NCTC 10812     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2132458..2142526 2143407..2145215 flank 881


Gene organization within MGE regions


Location: 2132458..2145215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL241_RS10460 (NCTC10812_02157) - 2132458..2132775 (-) 318 WP_036104900.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  EL241_RS13690 (NCTC10812_02158) - 2132927..2133100 (+) 174 WP_003754518.1 hypothetical protein -
  EL241_RS10465 (NCTC10812_02159) - 2133148..2133474 (-) 327 WP_003754517.1 thioredoxin family protein -
  EL241_RS10470 (NCTC10812_02160) - 2133471..2133905 (-) 435 WP_003754515.1 flavodoxin -
  EL241_RS10475 (NCTC10812_02161) - 2133902..2134951 (-) 1050 WP_003754513.1 ribonucleotide-diphosphate reductase subunit beta -
  EL241_RS10480 (NCTC10812_02162) - 2135042..2137318 (-) 2277 WP_036104894.1 ribonucleoside-diphosphate reductase subunit alpha -
  EL241_RS10485 (NCTC10812_02163) - 2137772..2139319 (+) 1548 WP_126320568.1 PA2928 family protein -
  EL241_RS10490 (NCTC10812_02164) - 2139334..2139528 (-) 195 WP_036104890.1 CsbD family protein -
  EL241_RS10495 (NCTC10812_02165) - 2139618..2140439 (-) 822 WP_036104887.1 hypothetical protein -
  EL241_RS10500 (NCTC10812_02166) - 2140459..2141715 (-) 1257 WP_126320569.1 hypothetical protein -
  EL241_RS10505 (NCTC10812_02167) - 2141891..2142526 (-) 636 WP_036104878.1 MBL fold metallo-hydrolase -
  EL241_RS10510 (NCTC10812_02168) - 2142643..2143026 (+) 384 WP_036104877.1 VOC family protein -
  EL241_RS10515 (NCTC10812_02170) pepF 2143407..2145215 (-) 1809 WP_003754502.1 oligoendopeptidase F Regulator

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68487.49 Da        Isoelectric Point: 4.6081

>NTDB_id=1123109 EL241_RS10515 WP_003754502.1 2143407..2145215(-) (pepF) [Listeria grayi strain NCTC 10812]
MSEQTLPLRQEVPEHLTWDLTTIYKSDEEWESAFKEIQQLVTESGQYQGKLGESSETLLAALRFRDTLFDKASNLYVYAH
LKMDQDTANPTYQSLHSRAGSLISQLMAAVSYFDPEILSIDEAKLAGFLEENADLRLYEHLLDELSISRPYILSEKEEAL
LASAGEVLGSSSDTFNTLNNADIKFPTIKNEDGESVEITHGRYGKLLESKDRSVREAAFKGVYQVYEGLKNTLASTLSGQ
VKKSNFYARVRGYKSAREAALSGNHIPEEVYDSLLESVNNNLPLLHRYVKLRQQLLGIEDLRMYDLYTPLSNDVDLNFTY
EEAKEVVLEGLKPLGEEYQAILKEAFDSRWIDVTENKGKRSGAYSSGAYSTSPYILLNWQDNIDNVFTLAHELGHSVHSY
YTRNNQPFIYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKIRAYLLNHYLDGFKGTVFRQSQFAEFEHKIHQADQGGEA
LTADYLTETYADINKKFYGTEVMHYDKEIGYEWSRIPHFYMNYYVFQYATGFSAASALSQKILDEGQSAVDDYIAYLKAG
NSDFPIDVLKKAGVDMTTSKPVDDALVVFEKRLTELETLVNK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1123109 EL241_RS10515 WP_003754502.1 2143407..2145215(-) (pepF) [Listeria grayi strain NCTC 10812]
ATGAGTGAACAGACATTACCATTAAGACAAGAGGTACCAGAGCATTTGACGTGGGATCTGACTACCATTTATAAGTCAGA
TGAAGAGTGGGAATCTGCTTTTAAAGAGATCCAGCAGTTAGTGACAGAAAGTGGCCAATATCAGGGTAAACTGGGGGAGA
GTAGCGAAACCTTACTAGCGGCGCTTCGTTTCCGCGATACGTTGTTTGATAAGGCTAGTAATCTATATGTATATGCCCAT
TTGAAAATGGACCAAGATACAGCAAATCCGACATACCAAAGTCTACATAGCAGAGCTGGGAGTCTGATTTCTCAACTGAT
GGCTGCGGTATCTTATTTTGATCCGGAGATTCTCTCGATTGATGAAGCAAAATTAGCAGGCTTTTTGGAAGAAAATGCTG
ATTTGCGCTTATACGAACATTTATTGGACGAACTTTCAATCAGCCGTCCCTATATTTTGAGTGAAAAAGAAGAAGCACTT
TTAGCAAGTGCAGGGGAAGTTCTTGGGAGTTCTTCGGATACCTTTAATACACTCAACAATGCTGACATCAAGTTCCCAAC
AATCAAAAATGAAGATGGCGAATCAGTGGAGATCACACATGGTCGTTATGGTAAATTATTGGAAAGCAAAGATCGTTCTG
TTCGTGAAGCCGCATTTAAAGGCGTTTATCAAGTTTATGAAGGCTTGAAAAATACCCTAGCGTCTACATTATCCGGACAA
GTAAAGAAATCGAATTTCTATGCTCGTGTCCGCGGATATAAATCTGCCCGGGAAGCAGCTTTGTCTGGGAACCATATTCC
TGAAGAAGTATATGACTCGTTATTAGAATCTGTCAATAATAATTTGCCACTGCTTCATCGCTACGTAAAACTGCGTCAAC
AGTTGTTAGGAATTGAAGACCTGCGGATGTATGATCTTTATACACCATTATCGAATGATGTTGATTTGAACTTTACGTAT
GAAGAAGCGAAAGAGGTTGTGCTGGAAGGATTAAAACCGCTTGGCGAGGAATATCAAGCAATCTTAAAAGAAGCATTCGA
CAGCAGATGGATCGATGTCACAGAAAACAAAGGGAAACGAAGCGGTGCCTACTCTTCTGGTGCATACAGTACAAGTCCTT
ACATTTTGCTGAACTGGCAAGACAATATTGACAATGTCTTTACGTTGGCTCACGAATTAGGGCATAGTGTGCATAGCTAC
TATACACGTAATAATCAGCCGTTCATCTACGGAGATTATTCGATTTTCTTAGCAGAAGTAGCCTCCACAACAAATGAAAA
CTTGCTAACAGATTATCTATTGAAGAAATACGATGATCCGAAGATTCGTGCGTATTTGTTGAATCATTATCTAGATGGTT
TTAAAGGAACTGTTTTCCGCCAATCACAATTTGCTGAATTCGAGCATAAGATCCATCAAGCTGATCAAGGCGGGGAAGCG
CTCACTGCCGATTATCTTACTGAAACATATGCGGACATCAATAAGAAATTTTACGGAACAGAAGTAATGCATTATGATAA
GGAAATTGGCTATGAATGGTCAAGAATTCCTCATTTCTATATGAATTATTACGTTTTCCAATATGCGACAGGTTTTTCGG
CAGCTTCTGCTTTAAGTCAAAAAATCTTAGACGAAGGACAATCAGCTGTGGATGATTATATTGCTTATCTGAAGGCTGGT
AATTCTGATTTTCCAATCGATGTGCTTAAAAAAGCGGGTGTAGATATGACGACCTCAAAACCAGTCGATGATGCGCTAGT
AGTTTTTGAGAAAAGATTAACGGAATTAGAAACGCTTGTGAATAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(116-185)

Peptidase family M3 (Peptidase_M3)

(206-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.694

98.671

0.52

Multiple sequence alignment