Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EL216_RS03045 Genome accession   NZ_LR134440
Coordinates   629099..629902 (-) Length   267 a.a.
NCBI ID   WP_085390447.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 624099..634902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS03025 (NCTC12228_00608) hemF 624547..625452 (-) 906 WP_085390453.1 oxygen-dependent coproporphyrinogen oxidase -
  EL216_RS03030 (NCTC12228_00609) pnp 625555..627690 (-) 2136 WP_085390451.1 polyribonucleotide nucleotidyltransferase -
  EL216_RS03035 (NCTC12228_00610) ruvX 627978..628436 (-) 459 WP_085390449.1 Holliday junction resolvase RuvX -
  EL216_RS03040 (NCTC12228_00611) - 628429..628977 (-) 549 WP_085390532.1 YqgE/AlgH family protein -
  EL216_RS03045 (NCTC12228_00612) comL 629099..629902 (-) 804 WP_085390447.1 outer membrane protein assembly factor BamD Machinery gene
  EL216_RS03050 (NCTC12228_00613) rluD 629901..631022 (+) 1122 WP_085390445.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EL216_RS03055 (NCTC12228_00614) kdsB 631084..631842 (-) 759 WP_085390443.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EL216_RS03060 (NCTC12228_00615) - 631839..632021 (-) 183 WP_085390530.1 Trm112 family protein -
  EL216_RS03065 (NCTC12228_00616) - 632038..632580 (-) 543 WP_232005260.1 DUF2059 domain-containing protein -
  EL216_RS03070 (NCTC12228_00617) lpxK 632580..633608 (-) 1029 WP_085390441.1 tetraacyldisaccharide 4'-kinase -
  EL216_RS03075 (NCTC12228_00618) - 633991..634554 (+) 564 WP_085390440.1 YbhB/YbcL family Raf kinase inhibitor-like protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30969.98 Da        Isoelectric Point: 9.3151

>NTDB_id=1122847 EL216_RS03045 WP_085390447.1 629099..629902(-) (comL) [Neisseria animaloris strain NCTC12228]
MKKILLVVALGFALGGCASTGTVDKDAQITQDWTVEKLYAEAQDELNSNNYTRAVKLYEILKSRFPNGRYAQQAQLDTAY
AHYKDDEPEKALAAIDRFQRNHPQHPNMDYALYLRGLVLFNEDKSFLNKLASQDWSDRDPKANREAYQAFSQLVSQYPNS
KYVGDATERMTKLVDALGGNEISVARYYMKRGAYLAAANRAQKVVQQYQNTRFVEESLAIMELAYRRINQPQLADDARRV
LEKNFPKSPYLQKEWRLDGIPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1122847 EL216_RS03045 WP_085390447.1 629099..629902(-) (comL) [Neisseria animaloris strain NCTC12228]
ATGAAAAAAATTCTTTTAGTAGTTGCTTTAGGTTTTGCCTTGGGCGGTTGCGCTTCCACGGGTACGGTCGATAAAGATGC
CCAGATCACTCAAGATTGGACGGTGGAAAAACTGTATGCCGAAGCTCAAGACGAATTAAACAGCAACAATTATACGCGAG
CCGTTAAATTATATGAAATTTTGAAATCGCGTTTTCCCAACGGACGTTATGCGCAACAGGCACAGTTGGATACAGCCTAC
GCCCACTATAAAGATGATGAGCCGGAAAAAGCACTGGCGGCCATCGACCGCTTCCAACGCAACCATCCGCAGCATCCCAA
TATGGATTACGCTTTGTACCTTAGAGGTTTGGTGTTGTTTAACGAAGATAAATCTTTCCTAAACAAGTTGGCTTCGCAAG
ACTGGTCCGATCGCGACCCTAAAGCCAACCGTGAAGCGTATCAGGCTTTCTCGCAGTTGGTTTCCCAATACCCCAACAGC
AAATATGTAGGCGATGCTACCGAGCGCATGACTAAATTAGTTGATGCCTTGGGCGGCAACGAAATTTCCGTAGCCCGCTA
TTACATGAAGCGCGGTGCTTACTTGGCTGCGGCTAACCGTGCACAAAAAGTGGTGCAGCAATATCAAAACACCCGTTTTG
TGGAAGAATCGCTGGCTATTATGGAGCTGGCTTACCGCCGTATCAACCAACCCCAATTGGCAGACGATGCCCGCCGTGTT
TTGGAGAAAAACTTCCCCAAGAGCCCATATCTGCAAAAAGAATGGCGTTTGGACGGTATACCTTGGTGGCGTTATTGGAA
GTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

80.075

99.625

0.798
  comL Neisseria gonorrhoeae MS11

78.571

99.625

0.783

Multiple sequence alignment