Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   EL216_RS02915 Genome accession   NZ_LR134440
Coordinates   603863..604552 (-) Length   229 a.a.
NCBI ID   WP_085390485.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 598863..609552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS02885 (NCTC12228_00580) ygiD 599337..600134 (+) 798 WP_085390495.1 4,5-DOPA dioxygenase extradiol -
  EL216_RS02890 (NCTC12228_00581) - 600160..600843 (-) 684 WP_085390493.1 Sir2 family NAD-dependent protein deacetylase -
  EL216_RS02895 (NCTC12228_00582) - 601094..601564 (-) 471 WP_085390491.1 PilX family type IV pilin -
  EL216_RS02900 (NCTC12228_00583) pilK 601577..602137 (-) 561 WP_085390489.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EL216_RS02905 (NCTC12228_00584) - 602116..603105 (-) 990 WP_085390487.1 PilW family protein -
  EL216_RS02910 (NCTC12228_00585) pilV 603108..603833 (-) 726 WP_197720441.1 type IV pilus modification protein PilV -
  EL216_RS02915 (NCTC12228_00586) pilH 603863..604552 (-) 690 WP_085390485.1 GspH/FimT family pseudopilin Machinery gene
  EL216_RS02920 (NCTC12228_00587) dnaB 604712..606121 (-) 1410 WP_085390483.1 replicative DNA helicase -
  EL216_RS02925 (NCTC12228_00588) - 606332..606913 (+) 582 WP_085390481.1 superoxide dismutase -
  EL216_RS02930 (NCTC12228_00589) - 606967..607416 (-) 450 WP_085390480.1 DUF4124 domain-containing protein -
  EL216_RS02935 (NCTC12228_00590) - 607477..607710 (-) 234 WP_232005258.1 hypothetical protein -
  EL216_RS02940 (NCTC12228_00591) - 607929..609026 (+) 1098 WP_085390478.1 glycerol dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25180.77 Da        Isoelectric Point: 9.9832

>NTDB_id=1122846 EL216_RS02915 WP_085390485.1 603863..604552(-) (pilH) [Neisseria animaloris strain NCTC12228]
MRPKQQGFTLIELLIVISIVAIMAAIALPNMNHWIASRRVASQAEQMVNLLRFARSEAIRLNLPVYVCPVQIRKDGNPNA
YCNEQYAGQGLAAFADRNGNGKYERKVDTDLRAIIFNSNNEAKRVIHTFETCDFNNVCTKGNLGWGFFSNGTFGYSTLTK
GNGGGIDIKALKRSAGYVKISMTDASVTNENAKKERSRVVLINSGGRASVCLNSDDSKKCEYKAPSSKT

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1122846 EL216_RS02915 WP_085390485.1 603863..604552(-) (pilH) [Neisseria animaloris strain NCTC12228]
ATGCGCCCTAAACAACAAGGCTTCACTTTAATCGAGCTCTTAATTGTAATTTCCATTGTTGCAATTATGGCTGCTATCGC
ACTTCCCAATATGAACCATTGGATCGCCTCCCGCCGTGTGGCTTCGCAGGCAGAACAAATGGTCAATCTTTTACGCTTTG
CCCGAAGCGAAGCAATTCGTTTGAACCTCCCTGTTTACGTTTGTCCTGTACAGATTAGAAAAGATGGAAATCCTAATGCA
TATTGTAATGAACAATATGCAGGCCAAGGGTTGGCTGCCTTCGCAGATAGAAATGGAAATGGAAAATACGAGCGCAAAGT
AGATACGGATTTGCGTGCTATTATTTTTAACTCAAATAATGAAGCCAAGCGAGTAATTCATACTTTTGAAACTTGTGATT
TCAATAATGTTTGCACTAAAGGTAATTTGGGATGGGGTTTCTTCTCTAACGGTACATTTGGCTATTCAACGTTAACGAAG
GGTAACGGAGGTGGTATCGATATTAAAGCTCTTAAAAGATCTGCTGGTTATGTCAAAATTTCTATGACAGATGCTTCTGT
AACGAATGAAAATGCTAAAAAAGAGCGATCAAGAGTGGTATTAATTAATAGTGGTGGTAGAGCAAGTGTGTGCTTGAATT
CAGACGATAGCAAAAAATGTGAATACAAAGCCCCTTCAAGCAAAACTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(43-206)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

50.226

96.507

0.485

Multiple sequence alignment