Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL212_RS11765 Genome accession   NZ_LR134394
Coordinates   2410632..2412437 (-) Length   601 a.a.
NCBI ID   WP_003720566.1    Uniprot ID   -
Organism   Listeria ivanovii subsp. londoniensis strain NCTC12701     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2405632..2417437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL212_RS11745 (NCTC12701_02399) isdE 2406572..2407444 (-) 873 WP_038407747.1 heme ABC transporter substrate-binding protein IsdE -
  EL212_RS11750 (NCTC12701_02400) - 2407532..2409247 (-) 1716 WP_038409147.1 NEAT domain-containing protein -
  EL212_RS11755 (NCTC12701_02401) isdC 2409260..2409883 (-) 624 WP_038407749.1 heme uptake protein IsdC -
  EL212_RS11760 (NCTC12701_02402) - 2410081..2410353 (-) 273 WP_003720565.1 DUF3116 family protein -
  EL212_RS11765 (NCTC12701_02405) pepF 2410632..2412437 (-) 1806 WP_003720566.1 oligoendopeptidase F Regulator
  EL212_RS11770 (NCTC12701_02406) - 2412512..2413627 (-) 1116 WP_038407750.1 competence protein CoiA family protein -
  EL212_RS11775 (NCTC12701_02407) mecA 2413754..2414407 (-) 654 WP_038409149.1 adaptor protein MecA -
  EL212_RS11780 (NCTC12701_02408) spxA 2414639..2415034 (-) 396 WP_003720569.1 transcriptional regulator SpxA -
  EL212_RS11785 (NCTC12701_02409) - 2415354..2416316 (-) 963 WP_038407751.1 ABC transporter ATP-binding protein -
  EL212_RS11790 (NCTC12701_02410) - 2416313..2417389 (-) 1077 WP_038407752.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68559.77 Da        Isoelectric Point: 4.6345

>NTDB_id=1122696 EL212_RS11765 WP_003720566.1 2410632..2412437(-) (pepF) [Listeria ivanovii subsp. londoniensis strain NCTC12701]
MSKTNALPLREEVPKELTWDLATIYPSDEAWEKAFEELQKIAEESTKFKGHLADSSQTLYEALQFRDKAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDETVLNQFVKENSDLQLYGHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDEDGEEIEITHGRFGKLLESNDPRVRRDAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYAATRGYQSAREAALSGNHIPETVYDSLLKSVNTNANLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YDEAKELVLEALKPLGEEYQEILKEAFSSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYEDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHTIHQADQNGI
ALTADYLTETYFDINKKYYGEAMVYDEEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQSAVTAYIDFLKAG
SSDYPIDVLKKAGVDMATPDPVDDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1122696 EL212_RS11765 WP_003720566.1 2410632..2412437(-) (pepF) [Listeria ivanovii subsp. londoniensis strain NCTC12701]
ATGAGTAAAACAAATGCATTGCCTTTAAGGGAAGAAGTACCAAAAGAGTTAACATGGGATTTAGCGACGATCTATCCAAG
TGATGAAGCCTGGGAAAAAGCGTTTGAAGAATTACAAAAAATTGCAGAAGAAAGTACTAAATTTAAAGGGCATCTAGCAG
ATAGTAGCCAAACATTATATGAAGCGCTACAATTTCGTGATAAAGCATATGATTTAATTAGTAATTTATATGTCTATGCT
CATTTAAAAATGGATCAAGATACAGCTAATGCTAAATATCAAGGGTTACATAGTCGGGCAGGTAGTTTAGTGACTAAGTT
AATGTCAGCATTATCCTACTATGATCCAGAAATATTAGCAATGGATGAAACTGTTTTAAACCAATTTGTAAAAGAGAATT
CAGATTTACAATTATATGGGCACCTTTTGGAAGAATTAAACCTTAGTCGTCCATATATTTTAAGTGAGAAGGAAGAAGCT
CTACTTGCAAATGCTGGAGAAGTTCTTGGAAGTTCATCTAATACATTTAATACGCTAAATAATGCAGATATGAAGTTCCC
AACTATTAAAGACGAAGATGGTGAAGAGATAGAAATCACACATGGACGTTTTGGGAAATTATTAGAAAGCAATGATCCAC
GTGTACGTAGAGATGCTTTTCTAGGTGTCTATTCTGTTTATGAAGGGCTAAAAAATACACTAGCATCAACATTAAACGGT
CAAGTGAAAAAATCTAATTTTTATGCTGCTACTCGTGGTTATCAATCAGCGCGTGAAGCAGCACTTTCTGGCAATCATAT
CCCTGAAACAGTATATGATTCGTTACTTAAGTCTGTAAATACGAATGCAAATTTACTTCATCGTTATGTGAAGTTACGTA
AAGAATTATTAGGGCTAGAAGAATTGCATATGTATGATCTTTATACACCGCTTTCGGATGATGTTAATTTAGAATTCACA
TATGATGAGGCAAAAGAACTTGTACTTGAGGCATTAAAGCCACTTGGAGAAGAGTATCAGGAAATCTTAAAAGAAGCTTT
TAGCAGTCGCTGGATTGATGTCATGGAAAACAAAGGAAAACGAAGTGGTGCCTATTCTTCCGGCTCTTATAGTACGAATC
CTTATATTTTGTTGAATTGGCAGGATAATATTAATAATGTATACACACTTGCGCATGAACTTGGTCACAGTGTGCATAGT
TACTATACTAGAAAAAACCAGCCATTTGTATATGGTGATTATTCGATTTTCTTAGCAGAGGTAGCTTCCACTACAAATGA
AAATCTTTTGACCGATTACTTGCTTAAAAAATATGAAGATCCGAAAGTACGTGCTTATCTACTAAATCATTATTTAGATG
GATTTAAAGGGACTGTTTTCCGTCAAACGCAATTTGCTGAGTTTGAGCATACTATTCATCAAGCAGATCAAAATGGTATT
GCGTTAACTGCAGATTACCTAACTGAAACTTACTTTGATATTAATAAGAAGTATTATGGTGAGGCGATGGTTTATGATGA
GGAAATCGGTTATGAATGGTCACGCATCCCACATTTCTATATGAACTACTATGTTTTCCAATATGCTACCGGATTTTCGG
CTGCTTCAGCGCTTAGTGCGAAAATTTTAACAGAAGGGCAATCTGCTGTAACGGCATATATTGACTTTTTGAAAGCTGGG
AGTTCGGATTACCCTATCGATGTGCTTAAAAAAGCGGGTGTTGATATGGCTACTCCTGATCCAGTAGATGATGCGTTAAA
AGTATTTGAACAAAGACTAGATGAATTAGAAAAATTGGTAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.182

98.502

0.504

Multiple sequence alignment