Detailed information
Bioinformatically predicted
Overview
| Name | rocC | Type | Regulator |
| Locus tag | EL220_RS16760 | Genome accession | NZ_LR134388 |
| Coordinates | 3845310..3845999 (-) | Length | 229 a.a. |
| NCBI ID | WP_027270564.1 | Uniprot ID | A0A0W0YD78 |
| Organism | Legionella sainthelensi strain NCTC11988 | ||
| Function | rocR chaperone; repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3840310..3850999
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL220_RS16735 (NCTC11988_03527) | pyk | 3840580..3841998 (+) | 1419 | WP_027270568.1 | pyruvate kinase | - |
| EL220_RS16745 (NCTC11988_03529) | - | 3842320..3842808 (+) | 489 | WP_027270567.1 | hypothetical protein | - |
| EL220_RS16750 (NCTC11988_03530) | - | 3843201..3843866 (+) | 666 | WP_027270566.1 | hypothetical protein | - |
| EL220_RS16755 (NCTC11988_03531) | - | 3843983..3845104 (+) | 1122 | WP_027270565.1 | hypothetical protein | - |
| EL220_RS16760 (NCTC11988_03532) | rocC | 3845310..3845999 (-) | 690 | WP_027270564.1 | ProQ/FinO family protein | Regulator |
| EL220_RS16765 (NCTC11988_03533) | - | 3846291..3846497 (+) | 207 | WP_035905888.1 | hypothetical protein | - |
| EL220_RS16770 (NCTC11988_03534) | dapB | 3846516..3847247 (+) | 732 | WP_027270562.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| EL220_RS16775 (NCTC11988_03535) | - | 3847288..3849762 (-) | 2475 | WP_027270561.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 229 a.a. Molecular weight: 25813.65 Da Isoelectric Point: 10.4497
>NTDB_id=1122634 EL220_RS16760 WP_027270564.1 3845310..3845999(-) (rocC) [Legionella sainthelensi strain NCTC11988]
MRKQELHPRTAVINKTQKNKSKKARTDALLWLAAHFPAAFDNSLRIRPLKIGIMDDILLHAEKAAEVGISKSKLREAVVL
FTRRLDYLACLKLREMRIDLQGNDVGEVSAEEAEYAAAKIKKRVEKSARNARKILAEKTVNPANPNPQGMSYHSKITNQS
SNTTEDHFPIYPTRSSYNALNATTQPVRTTAVVVKHKSAKQYDPDAVARLKEKLGLSRNSEEKKEIIEE
MRKQELHPRTAVINKTQKNKSKKARTDALLWLAAHFPAAFDNSLRIRPLKIGIMDDILLHAEKAAEVGISKSKLREAVVL
FTRRLDYLACLKLREMRIDLQGNDVGEVSAEEAEYAAAKIKKRVEKSARNARKILAEKTVNPANPNPQGMSYHSKITNQS
SNTTEDHFPIYPTRSSYNALNATTQPVRTTAVVVKHKSAKQYDPDAVARLKEKLGLSRNSEEKKEIIEE
Nucleotide
Download Length: 690 bp
>NTDB_id=1122634 EL220_RS16760 WP_027270564.1 3845310..3845999(-) (rocC) [Legionella sainthelensi strain NCTC11988]
ATGAGAAAACAGGAGCTGCACCCACGCACCGCTGTTATTAATAAAACTCAAAAAAATAAGTCTAAAAAAGCGCGAACAGA
TGCTTTGTTATGGCTAGCTGCACATTTTCCTGCAGCATTTGATAATTCATTACGAATTCGCCCATTAAAAATAGGTATTA
TGGATGATATTTTGCTTCATGCAGAAAAAGCTGCGGAAGTTGGTATTTCCAAAAGCAAATTAAGAGAGGCTGTGGTGTTA
TTTACTCGCCGCCTTGATTATTTAGCTTGCCTCAAGCTTCGAGAAATGCGAATTGATTTGCAAGGCAATGATGTGGGTGA
GGTGAGTGCTGAAGAAGCTGAATATGCGGCTGCCAAGATTAAAAAACGTGTTGAAAAAAGTGCTCGTAATGCACGTAAAA
TTCTCGCAGAAAAAACTGTAAATCCTGCTAATCCTAATCCTCAAGGCATGAGTTATCACTCAAAAATAACGAATCAGTCA
TCAAATACAACAGAGGATCATTTTCCAATTTATCCAACACGATCTAGTTACAATGCGCTGAATGCAACGACACAACCTGT
TCGAACTACTGCTGTAGTGGTAAAGCATAAATCGGCAAAACAATATGATCCTGATGCTGTCGCTCGTTTGAAAGAGAAAT
TAGGATTGTCTAGGAATTCCGAAGAGAAAAAAGAAATTATTGAAGAGTAA
ATGAGAAAACAGGAGCTGCACCCACGCACCGCTGTTATTAATAAAACTCAAAAAAATAAGTCTAAAAAAGCGCGAACAGA
TGCTTTGTTATGGCTAGCTGCACATTTTCCTGCAGCATTTGATAATTCATTACGAATTCGCCCATTAAAAATAGGTATTA
TGGATGATATTTTGCTTCATGCAGAAAAAGCTGCGGAAGTTGGTATTTCCAAAAGCAAATTAAGAGAGGCTGTGGTGTTA
TTTACTCGCCGCCTTGATTATTTAGCTTGCCTCAAGCTTCGAGAAATGCGAATTGATTTGCAAGGCAATGATGTGGGTGA
GGTGAGTGCTGAAGAAGCTGAATATGCGGCTGCCAAGATTAAAAAACGTGTTGAAAAAAGTGCTCGTAATGCACGTAAAA
TTCTCGCAGAAAAAACTGTAAATCCTGCTAATCCTAATCCTCAAGGCATGAGTTATCACTCAAAAATAACGAATCAGTCA
TCAAATACAACAGAGGATCATTTTCCAATTTATCCAACACGATCTAGTTACAATGCGCTGAATGCAACGACACAACCTGT
TCGAACTACTGCTGTAGTGGTAAAGCATAAATCGGCAAAACAATATGATCCTGATGCTGTCGCTCGTTTGAAAGAGAAAT
TAGGATTGTCTAGGAATTCCGAAGAGAAAAAAGAAATTATTGAAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rocC | Legionella pneumophila str. Paris |
68.261 |
100 |
0.686 |