Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   EL220_RS13630 Genome accession   NZ_LR134388
Coordinates   3101977..3102636 (-) Length   219 a.a.
NCBI ID   WP_058390698.1    Uniprot ID   -
Organism   Legionella sainthelensi strain NCTC11988     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3096977..3107636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL220_RS13615 (NCTC11988_02875) - 3098464..3099030 (-) 567 WP_027272041.1 hypothetical protein -
  EL220_RS13620 (NCTC11988_02876) - 3099039..3099752 (-) 714 WP_027272042.1 L,D-transpeptidase -
  EL220_RS13625 (NCTC11988_02877) uvrC 3099988..3101850 (-) 1863 WP_027272043.1 excinuclease ABC subunit UvrC -
  EL220_RS13630 (NCTC11988_02878) letA 3101977..3102636 (-) 660 WP_058390698.1 two-component system response regulator LetA Regulator
  EL220_RS13635 (NCTC11988_02879) phhA 3102745..3103563 (-) 819 WP_027272044.1 phenylalanine 4-monooxygenase -
  EL220_RS13640 (NCTC11988_02880) - 3103845..3104699 (-) 855 WP_027272045.1 hypothetical protein -
  EL220_RS13645 (NCTC11988_02881) dinB 3104883..3105950 (-) 1068 WP_027272046.1 DNA polymerase IV -
  EL220_RS13650 (NCTC11988_02882) - 3106012..3107286 (-) 1275 WP_027272047.1 Y-family DNA polymerase -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24304.29 Da        Isoelectric Point: 5.1733

>NTDB_id=1122632 EL220_RS13630 WP_058390698.1 3101977..3102636(-) (letA) [Legionella sainthelensi strain NCTC11988]
MIKVLIVDDHALVRMGIRRLLEDMSDVEVVADAESGEQALVLVKQYSPDVVLLDMKMPGIDGWEVTRRLKKSNPHAKVIA
VTAMCSDVLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLEEAQGSPFNVLSEREMQVMLMI
TSGMNVQEISDRLFLSTKTINGYRYRTFEKLGIKNDVELTYLALKHGIIENPTGLTSEE

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1122632 EL220_RS13630 WP_058390698.1 3101977..3102636(-) (letA) [Legionella sainthelensi strain NCTC11988]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTCGAATGGGTATTCGACGATTACTCGAAGATATGTCAGATGT
AGAAGTTGTTGCTGATGCAGAAAGTGGTGAACAAGCTTTAGTGTTAGTAAAGCAATATTCCCCTGACGTAGTTCTTTTAG
ATATGAAAATGCCTGGGATTGATGGCTGGGAAGTAACGCGTCGTCTGAAAAAATCAAATCCACATGCTAAAGTTATAGCT
GTAACTGCAATGTGTTCTGATGTATTGCCCACCCGTGTTTTGCAATTAGGGGCTATGGGGTATCTCACTAAAGAATCGGG
TGCTGAAGAAATGGCCGCCGCGATAAGGAAGGTAGCTAAAGGGGAAAAATACCTTAGTGCTGAAATTGCTCAAAAAATGG
CAATCAATAGTCTGGAAGAAGCACAAGGATCCCCTTTTAATGTATTATCGGAACGAGAAATGCAAGTCATGTTGATGATT
ACAAGTGGCATGAATGTACAAGAAATCAGCGATAGGCTTTTCTTGAGTACTAAAACGATCAATGGCTATCGTTATCGCAC
TTTTGAGAAGTTAGGTATAAAAAATGATGTTGAGCTGACCTACTTAGCTTTGAAGCATGGAATCATAGAAAATCCTACTG
GTTTGACGTCAGAAGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

87.215

100

0.872

  letA Legionella pneumophila strain ERS1305867

87.215

100

0.872


Multiple sequence alignment