Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EL220_RS05510 Genome accession   NZ_LR134388
Coordinates   1228266..1228685 (-) Length   139 a.a.
NCBI ID   WP_027271734.1    Uniprot ID   A0A0W0YPV6
Organism   Legionella sainthelensi strain NCTC11988     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1223266..1233685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL220_RS05485 (NCTC11988_01147) potA 1223402..1224496 (+) 1095 WP_027271729.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -
  EL220_RS05490 (NCTC11988_01148) - 1224486..1225310 (+) 825 WP_027271730.1 ABC transporter permease -
  EL220_RS05495 (NCTC11988_01149) - 1225495..1226073 (+) 579 WP_232002641.1 ABC transporter permease subunit -
  EL220_RS05500 (NCTC11988_01150) - 1226070..1227095 (+) 1026 WP_027271732.1 ABC transporter substrate-binding protein -
  EL220_RS05505 (NCTC11988_01151) - 1227343..1227981 (+) 639 WP_027271733.1 hypothetical protein -
  EL220_RS05510 (NCTC11988_01152) pilE 1228266..1228685 (-) 420 WP_027271734.1 type IV pilin protein Machinery gene
  EL220_RS05515 (NCTC11988_01153) - 1228696..1232175 (-) 3480 WP_027271735.1 pilus assembly protein -
  EL220_RS05520 (NCTC11988_01154) - 1232188..1232619 (-) 432 WP_232002642.1 pilus assembly protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15215.46 Da        Isoelectric Point: 8.0929

>NTDB_id=1122617 EL220_RS05510 WP_027271734.1 1228266..1228685(-) (pilE) [Legionella sainthelensi strain NCTC11988]
MKQPKRKGFTLIDLMIALVVMAILVTIAYPYYVSFLLKARRADALATLAQDQILLERCYAQNFSYNTCTSLPAFPQTSAQ
GFYSITLSNLGATFYTLTATPRGSQTEDTTCASMTVDQANVKTAVDSSGTTQTICWNPS

Nucleotide


Download         Length: 420 bp        

>NTDB_id=1122617 EL220_RS05510 WP_027271734.1 1228266..1228685(-) (pilE) [Legionella sainthelensi strain NCTC11988]
ATGAAACAACCTAAAAGAAAAGGATTTACCTTAATTGATTTAATGATAGCTTTAGTGGTTATGGCGATACTGGTGACTAT
TGCCTACCCCTACTACGTGAGCTTTTTGCTAAAAGCACGCCGCGCTGATGCTTTGGCCACACTAGCTCAAGACCAAATTC
TTCTTGAACGCTGCTATGCTCAAAATTTTTCTTATAATACATGTACCTCTTTACCTGCTTTTCCGCAAACATCAGCGCAA
GGATTCTACAGCATCACCTTAAGTAATCTGGGTGCAACATTCTATACTCTTACTGCAACACCGCGAGGAAGCCAGACCGA
AGATACTACGTGTGCGAGTATGACAGTAGATCAAGCCAACGTAAAAACTGCCGTAGATTCCTCAGGAACGACGCAAACGA
TTTGTTGGAATCCTTCATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0YPV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

62.963

97.122

0.612
  pilE Legionella pneumophila strain ERS1305867

62.963

97.122

0.612

Multiple sequence alignment