Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EL220_RS02705 Genome accession   NZ_LR134388
Coordinates   607701..608405 (-) Length   234 a.a.
NCBI ID   WP_414092931.1    Uniprot ID   -
Organism   Legionella sainthelensi strain NCTC11988     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 602701..613405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL220_RS02680 (NCTC11988_00553) prmC 602803..603609 (-) 807 WP_027270750.1 peptide chain release factor N(5)-glutamine methyltransferase -
  EL220_RS02685 (NCTC11988_00554) prfA 603602..604690 (-) 1089 WP_027270751.1 peptide chain release factor 1 -
  EL220_RS02690 (NCTC11988_00555) hemA 604674..605948 (-) 1275 WP_027270752.1 glutamyl-tRNA reductase -
  EL220_RS02695 (NCTC11988_00556) - 606315..606602 (+) 288 WP_027270753.1 hypothetical protein -
  EL220_RS02700 (NCTC11988_00557) - 606614..607678 (+) 1065 WP_027270754.1 M50 family metallopeptidase -
  EL220_RS02705 (NCTC11988_00558) comFC 607701..608405 (-) 705 WP_414092931.1 ComF family protein Machinery gene
  EL220_RS02710 (NCTC11988_00559) bioC 608444..609301 (+) 858 WP_027270756.1 malonyl-ACP O-methyltransferase BioC -
  EL220_RS02715 (NCTC11988_00560) - 609488..610285 (-) 798 WP_035905958.1 LirA/MavJ family T4SS effector -
  EL220_RS02720 (NCTC11988_00561) - 610416..611297 (-) 882 WP_027270758.1 polyprenyl synthetase family protein -
  EL220_RS02725 (NCTC11988_00562) - 611290..611508 (-) 219 WP_027270759.1 exodeoxyribonuclease VII small subunit -
  EL220_RS02730 (NCTC11988_00563) radA 611684..613036 (+) 1353 WP_027270760.1 DNA repair protein RadA -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26871.60 Da        Isoelectric Point: 9.7865

>NTDB_id=1122607 EL220_RS02705 WP_414092931.1 607701..608405(-) (comFC) [Legionella sainthelensi strain NCTC11988]
MRQKIWSLAQSLRIYSICILCNQYHNNKMAVCSHCLELMPLLGPGCRYCAYPLPDTHFLVCGNCIKKPPSFDRAFIKYTF
EEPLRSLLHQFKYHEGLYLTSFLSYLIFKSLSNQADMPQCLIPVPMHSQRIKQRGFNQAAVLARSLAKKLQLPCNLFSCQ
KTLNTKPQAGLDEKQRRKNLRSAFITQKLPYQHVAIIDDLLTTGNTANELARTLKKSGVKQVDVWCCARTIEKQ

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1122607 EL220_RS02705 WP_414092931.1 607701..608405(-) (comFC) [Legionella sainthelensi strain NCTC11988]
GTGCGTCAAAAAATATGGAGTTTAGCACAAAGTTTACGTATATACTCAATATGTATCTTATGTAATCAATACCACAACAA
CAAAATGGCCGTGTGTTCACATTGCCTTGAACTCATGCCTTTGCTAGGCCCTGGTTGTCGCTATTGTGCTTATCCCTTAC
CTGACACCCATTTTCTCGTCTGCGGAAATTGTATTAAAAAACCACCCTCTTTTGATAGAGCATTCATAAAGTATACTTTT
GAAGAGCCACTGCGAAGCCTTTTACATCAATTCAAATATCATGAGGGGCTATATCTTACATCTTTTTTAAGCTATTTAAT
TTTTAAATCACTATCAAACCAAGCAGATATGCCTCAGTGTTTGATCCCTGTCCCCATGCATTCACAACGAATCAAACAAC
GTGGATTTAACCAAGCCGCCGTCTTAGCTCGTTCTTTAGCTAAAAAATTACAGCTCCCTTGTAATTTATTCAGTTGCCAA
AAAACGCTCAACACAAAACCTCAAGCAGGTCTGGATGAAAAACAAAGGAGAAAAAATTTACGCTCTGCCTTTATAACCCA
AAAACTTCCTTATCAGCATGTCGCCATTATCGATGATCTTCTTACCACCGGTAATACCGCAAATGAACTGGCACGCACCT
TAAAGAAATCCGGAGTAAAGCAAGTGGATGTTTGGTGTTGCGCGCGCACCATAGAAAAACAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

60.944

99.573

0.607
  comFC Legionella pneumophila strain ERS1305867

62.051

83.333

0.517

Multiple sequence alignment