Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   EL180_RS03665 Genome accession   NZ_LR134385
Coordinates   858458..859159 (-) Length   233 a.a.
NCBI ID   WP_009994318.1    Uniprot ID   -
Organism   Gardnerella vaginalis strain NCTC10287     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 853458..864159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL180_RS07335 - 853805..853969 (-) 165 Protein_639 ATPase -
  EL180_RS03645 (NCTC10287_00678) - 854410..855660 (+) 1251 WP_004138600.1 Fic family protein -
  EL180_RS03650 (NCTC10287_00679) - 855684..856724 (+) 1041 WP_009994313.1 FAD:protein FMN transferase -
  EL180_RS03660 (NCTC10287_00681) - 857042..858451 (-) 1410 WP_013399787.1 sensor histidine kinase KdpD -
  EL180_RS03665 (NCTC10287_00682) scnR 858458..859159 (-) 702 WP_009994318.1 response regulator transcription factor Regulator
  EL180_RS03670 (NCTC10287_00683) - 859299..860063 (+) 765 WP_004138603.1 ABC transporter ATP-binding protein -
  EL180_RS03675 (NCTC10287_00684) - 860060..860785 (+) 726 WP_009994320.1 ABC transporter permease -
  EL180_RS03680 (NCTC10287_00685) - 860799..861563 (+) 765 WP_004114222.1 ABC transporter permease -
  EL180_RS03690 (NCTC10287_00686) - 861862..862065 (+) 204 WP_230846519.1 hypothetical protein -
  EL180_RS03695 (NCTC10287_00687) - 862312..864048 (+) 1737 WP_009994324.1 FTR1 family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26456.61 Da        Isoelectric Point: 4.8694

>NTDB_id=1122577 EL180_RS03665 WP_009994318.1 858458..859159(-) (scnR) [Gardnerella vaginalis strain NCTC10287]
MNLNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIKDAVEATQKLRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAQVIKNNEHIQLT
AKEYDLLSALYRNAGCIVTIDALCEATWGANPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1122577 EL180_RS03665 WP_009994318.1 858458..859159(-) (scnR) [Gardnerella vaginalis strain NCTC10287]
ATGAATCTGAATGATTATTTATTGAACAAGCATCTGCTGCTTGTTGATGATGAGCAGGAACTTCTAGATATGGTTGTGTC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAAAGATGCCGTAGAAGCAACACAAAAATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAGTTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCCTCTGCCCAAGTAATAAAAAATAACGAACATATTCAACTCACA
GCCAAAGAATATGATTTACTTTCTGCACTTTATAGAAATGCTGGATGCATTGTAACAATTGACGCATTATGTGAAGCTAC
ATGGGGAGCTAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATAAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCATTGGTAACAGTAAAAGGTTTAGGATACAAGCTGATTGTGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(13-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.915

95.708

0.506

Multiple sequence alignment