Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   EL201_RS03265 Genome accession   NZ_LR134380
Coordinates   683559..685790 (-) Length   743 a.a.
NCBI ID   WP_027223680.1    Uniprot ID   A0AAX2IUQ9
Organism   Legionella pneumophila subsp. pascullei strain NCTC12273     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 678559..690790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL201_RS03245 (NCTC12273_00648) - 679057..680985 (-) 1929 WP_027223676.1 hypothetical protein -
  EL201_RS03250 (NCTC12273_00649) - 681113..681505 (-) 393 WP_027223677.1 membrane protein -
  EL201_RS03255 (NCTC12273_00650) - 681642..682019 (+) 378 WP_027223678.1 hypothetical protein -
  EL201_RS03260 (NCTC12273_00651) - 682219..683526 (+) 1308 WP_027223679.1 tetratricopeptide repeat protein -
  EL201_RS03265 (NCTC12273_00652) comEC 683559..685790 (-) 2232 WP_027223680.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EL201_RS03270 (NCTC12273_00653) pilE 685868..686317 (-) 450 WP_027223681.1 type IV pilin protein Machinery gene
  EL201_RS03275 (NCTC12273_00654) - 686329..689838 (-) 3510 WP_027223682.1 pilus assembly protein -
  EL201_RS03280 (NCTC12273_00655) - 689851..690363 (-) 513 WP_027223683.1 pilus assembly protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 84036.72 Da        Isoelectric Point: 9.9091

>NTDB_id=1122487 EL201_RS03265 WP_027223680.1 683559..685790(-) (comEC) [Legionella pneumophila subsp. pascullei strain NCTC12273]
MEIFCFLTGILYAYTYNIYLTLAVPLLFYITPRYPIVLFFLAGWGFALIHQWIVSPKRMPDTQVITQAQLEGTIASIPMQ
RPNKTQFHFAIEKINNKPAQGLIQLTWYNKPPALRAGQQWQLSVKLKKPRNFRNPGGFNYVRYLATRHIHWAGYIRYGNN
KLISNHPSTFSWLTVREKIADALTKLAPDTETAGIIEALTINITHHISPEHWNLFRRTGTVHLFGISGEHIALVSGVFFI
VIRWLWSMSYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCVLYTIYAIGKQRFSQWQIWRYALFLVLCIE
PHAVFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLSCLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLAL
MTMIMSSFDWSWILMKPLAVFVALLLKGLTYVEQIAGINITLSITSVTMMLAMTAGLFLRVLLPVKPFKHLAILWIIIPL
FPPHTAIYQGEALINILDVGQGLAVAIQTQHHVLLYDTGDSFFQGSDLGQMAIIPFFRSSGIKTIDNIVISHPDKDHKGG
LNSIEKEMQVNQLIVNDPHFYKRGSNCHSYPQWQWDGVSFRFLPIRESFTKKNNNSCILQVSNSTGRVLLTGDIEKAAED
YLIRNYGSQLASEILVVPHHGSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPHSKTLQSMKTLGITFFRTDECGMARIKL
PSSGKINKPTCMQAKSVAALNAQ

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=1122487 EL201_RS03265 WP_027223680.1 683559..685790(-) (comEC) [Legionella pneumophila subsp. pascullei strain NCTC12273]
ATGGAAATTTTTTGCTTTTTAACAGGCATCCTTTATGCCTATACCTATAATATTTATCTAACTCTTGCAGTTCCTTTACT
CTTTTACATCACACCAAGATATCCGATTGTCCTGTTCTTCCTTGCCGGGTGGGGCTTTGCCCTGATTCACCAGTGGATTG
TATCACCCAAGAGAATGCCTGATACGCAAGTAATCACTCAAGCACAATTGGAAGGAACAATTGCTTCCATCCCCATGCAA
CGTCCCAACAAAACTCAATTCCATTTTGCAATTGAAAAAATTAATAATAAACCTGCTCAAGGCTTAATCCAATTGACCTG
GTACAACAAACCACCGGCCTTACGAGCTGGTCAGCAATGGCAACTTTCAGTGAAACTAAAAAAACCTCGTAATTTCCGCA
ACCCGGGAGGTTTTAATTATGTACGCTACCTGGCAACTCGTCATATCCATTGGGCGGGTTATATTCGTTATGGGAATAAT
AAGCTAATTAGCAATCACCCCTCCACTTTCAGTTGGTTAACTGTACGTGAAAAAATAGCGGATGCGCTGACAAAACTGGC
CCCTGATACAGAAACAGCAGGCATCATTGAAGCATTGACGATAAATATCACTCATCATATCAGTCCCGAACATTGGAATT
TGTTCCGAAGAACAGGAACAGTGCATTTATTCGGGATATCAGGAGAGCACATCGCTTTGGTTTCTGGAGTTTTCTTTATC
GTTATAAGATGGCTTTGGTCAATGAGCTATCGTTGTTGTTTATTCTTACCAGCCAATACCATAGCGAGTATCGGTGGATT
ATTGGCTGCCTTGCCCTATGCCTTTTTAGCCGGATTTGAACCCCCTGTACAGCGTGCTTTAATTGGTTGTGTACTTTACA
CAATATACGCCATTGGAAAACAACGTTTTAGCCAATGGCAAATATGGAGATATGCCTTATTTTTAGTCTTGTGCATTGAA
CCCCACGCTGTATTCCTGCAAGGATTTTATTTTTCATTTCTTGCGGTGGCCTGTCTACTATTGACTCACCAACGTTGGCC
ACTGAAAAACTACAAAAAGACACTTGCATTACAATTAAGCTGCCTCATTGGATTGATGCCTTTAACTCTCCATTGGTACT
CCTATGGCTCTATCAATGGATTTCTTGCCAATTTATTTGCCATACCTTTAGTCAGCTTTCTGATAGTACCCTTGGCTTTA
ATGACTATGATTATGAGTTCATTTGATTGGTCCTGGATATTAATGAAACCATTGGCCGTGTTTGTTGCCCTGTTACTTAA
AGGGTTGACGTATGTTGAGCAAATAGCAGGAATCAATATCACCTTGTCCATCACCTCAGTAACAATGATGCTTGCTATGA
CAGCAGGTCTGTTTTTAAGAGTATTATTACCTGTCAAGCCATTCAAACACTTGGCGATCCTTTGGATTATCATTCCCTTA
TTTCCGCCTCATACTGCAATTTACCAGGGGGAAGCATTAATTAATATTTTGGATGTTGGGCAAGGGCTGGCTGTTGCGAT
ACAAACACAACACCATGTTTTACTCTACGATACGGGAGATTCATTTTTTCAAGGCAGTGATTTAGGGCAAATGGCAATAA
TACCTTTTTTTAGGTCATCTGGAATAAAAACCATTGATAACATTGTGATAAGCCATCCTGATAAAGATCATAAGGGTGGC
TTAAACTCCATTGAAAAAGAGATGCAAGTCAATCAATTAATAGTGAATGATCCCCATTTTTATAAACGTGGAAGTAATTG
TCACTCATATCCTCAATGGCAATGGGATGGGGTGAGTTTTCGTTTTTTACCGATCAGGGAGTCTTTCACTAAAAAAAATA
ATAACTCTTGTATTTTACAAGTAAGTAATTCGACTGGCAGAGTTTTATTAACGGGAGATATTGAAAAAGCGGCTGAAGAC
TACCTGATAAGAAACTATGGCAGTCAGTTGGCATCTGAAATTTTAGTTGTTCCTCATCATGGGAGTAAGACTTCCTCATC
TTATCGATTTTTACTGGAAGTAAACCCGCTTTATGCCATTGCATCTTTGGGATTTGATAATCGCTTCAAATTTCCACACT
CCAAAACGTTGCAAAGCATGAAAACATTAGGTATCACTTTTTTCAGAACAGACGAATGCGGCATGGCAAGAATCAAATTA
CCTTCATCCGGGAAAATTAACAAACCGACCTGTATGCAGGCTAAATCAGTAGCGGCATTGAATGCTCAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-580)

Domain of unknown function (DUF4131) (DUF4131)

(20-158)

Competence protein (Competence)

(200-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

92.371

98.789

0.913
  comEC Legionella pneumophila strain ERS1305867

91.837

98.923

0.908

Multiple sequence alignment