Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   EL158_RS05985 Genome accession   NZ_LR134372
Coordinates   1191554..1192495 (+) Length   313 a.a.
NCBI ID   WP_027303578.1    Uniprot ID   A0A3S4SP00
Organism   Campylobacter upsaliensis strain NCTC11541     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1186554..1197495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL158_RS05965 (NCTC11541_01224) cysS 1186575..1187939 (-) 1365 WP_027303574.1 cysteine--tRNA ligase -
  EL158_RS05970 (NCTC11541_01225) murJ 1187926..1189380 (-) 1455 WP_027303575.1 murein biosynthesis integral membrane protein MurJ -
  EL158_RS05975 (NCTC11541_01226) - 1189438..1190625 (-) 1188 WP_027303576.1 glycosyltransferase family 8 protein -
  EL158_RS05980 (NCTC11541_01227) - 1190653..1191504 (-) 852 WP_027303577.1 glycosyltransferase family 2 protein -
  EL158_RS05985 (NCTC11541_01228) waaF 1191554..1192495 (+) 942 WP_027303578.1 glycosyltransferase family 9 protein Regulator
  EL158_RS05990 (NCTC11541_01229) - 1192485..1193018 (-) 534 WP_027303579.1 HyaD/HybD family hydrogenase maturation endopeptidase -
  EL158_RS05995 (NCTC11541_01230) cybH 1193015..1193707 (-) 693 WP_027303580.1 Ni/Fe-hydrogenase, b-type cytochrome subunit -
  EL158_RS06000 (NCTC11541_01231) - 1193717..1195432 (-) 1716 WP_027303581.1 nickel-dependent hydrogenase large subunit -
  EL158_RS06005 (NCTC11541_01232) - 1195435..1196574 (-) 1140 WP_027303582.1 hydrogenase small subunit -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35621.29 Da        Isoelectric Point: 10.3756

>NTDB_id=1122357 EL158_RS05985 WP_027303578.1 1191554..1192495(+) (waaF) [Campylobacter upsaliensis strain NCTC11541]
MKIFINLPTWLGDCVMASAAIYGIKERFKEAEFVFFGSFVATTLFKDFSNSSFIVEDKKRRYFQALSLRKNHHFNLAFSF
RSALSARLILKIIKAKKKFCFDKTIIKEEHQVLKYLNFVQKSLDFQASQELKLPLNVKFKTPLTLKNGKKILALNPGANY
GSAKRWSEEYFAKVGLYFAKDYEIIILGAGKEEAKICAKICEILAQNGIKAKNLCNKTSIHTLTQNIALSDLFLTNDSGA
MHLGAALKVKMLVLFGPTKFTQTSPWQSKNAKIIHLNLACMPCMKRVCPLKHHKCMQDLTPQMVIEKLKEFKA

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1122357 EL158_RS05985 WP_027303578.1 1191554..1192495(+) (waaF) [Campylobacter upsaliensis strain NCTC11541]
ATGAAAATTTTTATCAATCTTCCCACTTGGCTAGGCGATTGTGTTATGGCTAGTGCGGCGATTTATGGCATTAAAGAGCG
GTTTAAAGAAGCGGAATTTGTCTTTTTTGGCTCTTTTGTAGCGACAACACTTTTTAAAGATTTTTCTAATTCTAGCTTCA
TAGTGGAGGATAAAAAAAGGCGTTATTTTCAAGCTCTTTCCTTGCGTAAAAATCATCATTTTAATCTCGCTTTTTCCTTT
CGCTCTGCCCTTTCAGCTAGGCTCATTTTAAAAATCATCAAAGCTAAGAAAAAATTTTGTTTTGATAAAACTATCATTAA
AGAAGAACATCAGGTTTTAAAATACTTAAATTTCGTTCAAAAATCCCTTGATTTCCAAGCTTCGCAAGAGTTAAAGCTCC
CTCTTAATGTCAAATTTAAAACGCCTCTAACTCTTAAAAATGGCAAAAAAATTCTAGCCTTAAATCCGGGTGCTAACTAT
GGAAGTGCGAAACGCTGGAGTGAGGAGTATTTTGCCAAAGTGGGACTTTATTTTGCTAAAGATTATGAAATTATCATTTT
AGGAGCAGGTAAAGAAGAGGCTAAAATTTGTGCTAAAATCTGCGAAATTCTTGCACAAAATGGCATTAAAGCTAAGAATT
TATGCAATAAAACAAGTATTCATACCCTTACGCAAAATATCGCTCTAAGCGATCTTTTTCTCACAAATGACAGCGGTGCT
ATGCATTTAGGTGCAGCTTTAAAAGTCAAAATGCTCGTGCTATTTGGACCAACCAAATTCACACAAACTTCTCCTTGGCA
AAGTAAAAATGCCAAAATTATCCATCTTAATCTAGCCTGTATGCCCTGCATGAAGCGTGTTTGTCCGCTAAAGCATCACA
AATGTATGCAGGATTTAACACCACAAATGGTTATAGAAAAATTAAAAGAATTTAAGGCTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(107-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4SP00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.058

99.361

0.617

Multiple sequence alignment