Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EL339_RS04585 Genome accession   NZ_LR134361
Coordinates   1022082..1023116 (+) Length   344 a.a.
NCBI ID   WP_408609561.1    Uniprot ID   -
Organism   Achromobacter insolitus strain NCTC13520     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1017082..1028116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL339_RS04560 (NCTC13520_00911) - 1018573..1018959 (+) 387 WP_042795129.1 MOSC N-terminal beta barrel domain-containing protein -
  EL339_RS04565 (NCTC13520_00912) - 1018999..1020222 (-) 1224 WP_076815477.1 benzoate/H(+) symporter BenE family transporter -
  EL339_RS04570 (NCTC13520_00913) - 1020219..1020470 (-) 252 WP_042795127.1 YfhL family 4Fe-4S dicluster ferredoxin -
  EL339_RS04575 (NCTC13520_00914) coaD 1020595..1021098 (-) 504 WP_013396175.1 pantetheine-phosphate adenylyltransferase -
  EL339_RS04580 (NCTC13520_00915) rsmD 1021157..1021723 (-) 567 WP_042795126.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  EL339_RS04585 (NCTC13520_00916) pilA 1022082..1023116 (+) 1035 WP_408609561.1 signal recognition particle-docking protein FtsY Machinery gene
  EL339_RS04590 (NCTC13520_00917) - 1023201..1024859 (-) 1659 WP_063642819.1 CYTH and CHAD domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 35713.20 Da        Isoelectric Point: 8.5379

>NTDB_id=1122268 EL339_RS04585 WP_408609561.1 1022082..1023116(+) (pilA) [Achromobacter insolitus strain NCTC13520]
MAPVPAPATAPAPALAPNPAPAAPSAVAPAPIVEAAAEAPKKASWLSRLKQGLSRTGQSIGGIFVGVKVDENLFEELESA
LIMADAGLEATEKLLTALRARVKKERIEDPAKVKAALRQLLADHLRPLERAFDLKRTQPLVVMIAGVNGAGKTTSIGKLA
HTFQRQGASVLLAAGDTFRAAAREQLIEWGSRNNVTVISQDGGDPAAVAFDAVNAGRARGMGVVMVDTAGRLPTQLHLME
ELKKIRRVIGKADAAAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWI
GVGESLEDLQPFVADEFAGALLAD

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1122268 EL339_RS04585 WP_408609561.1 1022082..1023116(+) (pilA) [Achromobacter insolitus strain NCTC13520]
GTGGCGCCGGTGCCTGCACCGGCGACTGCCCCGGCACCGGCTTTGGCGCCGAATCCCGCGCCGGCAGCGCCTTCGGCGGT
TGCCCCCGCGCCCATTGTCGAAGCCGCCGCGGAAGCGCCCAAGAAGGCATCGTGGCTGTCCCGCCTGAAACAGGGGCTGT
CGCGCACAGGTCAGAGCATTGGCGGTATTTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTCGAGTCGGCG
CTCATTATGGCCGATGCGGGCCTGGAGGCTACCGAAAAGCTCTTGACCGCGCTGCGCGCCCGCGTGAAAAAAGAGCGCAT
CGAGGACCCGGCCAAGGTGAAGGCGGCGCTGCGCCAGTTGCTGGCCGACCACCTGCGTCCGCTGGAGCGCGCATTCGATT
TGAAGCGCACGCAGCCGCTGGTCGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACCACGTCGATCGGCAAGCTGGCC
CATACCTTTCAGCGCCAGGGCGCCAGCGTGCTGTTGGCTGCGGGCGATACTTTCCGCGCAGCGGCGCGCGAGCAGCTTAT
CGAATGGGGCAGCCGCAACAACGTGACGGTGATCTCGCAGGACGGCGGCGATCCCGCAGCCGTAGCGTTCGATGCCGTCA
ATGCCGGCCGCGCGCGCGGCATGGGCGTGGTGATGGTCGACACTGCCGGCCGCCTGCCCACCCAACTGCACCTGATGGAA
GAACTCAAGAAGATCCGCCGCGTCATCGGCAAGGCGGATGCCGCGGCGCCGCACGAGGTGCTGCTGGTGGTGGACGGCAA
TACCGGCCAGAACGCCTTGGCGCAGATCCGCGCCTTTGACGCCGCAATCAATCTGACGGGCCTGGTCGTGACCAAGCTGG
ACGGCACCGCCAAGGGGGGCACGCTGGCTGCCGTGGCCGCGGGCAGCCAGGGCGTGCGTCCGATTCCGGTGTACTGGATC
GGCGTGGGCGAAAGCCTGGAAGACCTGCAGCCCTTTGTGGCTGACGAATTCGCCGGGGCCTTGCTGGCGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(140-342)

SRP54-type protein, helical bundle domain (SRP54_N)

(58-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

58.497

88.953

0.52

Multiple sequence alignment