Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL147_RS03255 Genome accession   NZ_LR134341
Coordinates   675850..677652 (-) Length   600 a.a.
NCBI ID   WP_007894828.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 670850..682652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS03240 (NCTC13786_00650) prsA 673253..674194 (-) 942 WP_007894784.1 peptidylprolyl isomerase PrsA -
  EL147_RS03245 (NCTC13786_00651) - 674257..674964 (-) 708 WP_176602248.1 O-methyltransferase -
  EL147_RS03250 (NCTC13786_00652) - 675132..675773 (-) 642 WP_007894733.1 HAD family phosphatase -
  EL147_RS03255 (NCTC13786_00653) pepF 675850..677652 (-) 1803 WP_007894828.1 oligoendopeptidase F Regulator
  EL147_RS03260 (NCTC13786_00654) - 677662..678612 (-) 951 WP_007894679.1 competence protein CoiA -
  EL147_RS03265 (NCTC13786_00655) - 678675..679820 (-) 1146 WP_007894728.1 MFS transporter -
  EL147_RS03270 (NCTC13786_00656) - 679915..680631 (-) 717 WP_007894613.1 pseudouridine synthase -
  EL147_RS03275 (NCTC13786_00657) nagB 680698..681408 (-) 711 WP_007894732.1 glucosamine-6-phosphate deaminase -
  EL147_RS03280 (NCTC13786_00658) queA 681582..682610 (+) 1029 WP_007894820.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69919.10 Da        Isoelectric Point: 4.7422

>NTDB_id=1121992 EL147_RS03255 WP_007894828.1 675850..677652(-) (pepF) [Streptococcus pseudoporcinus strain NCTC13786]
MADNRSHLEEKYTWDLTTIFDSDQKWETEVNDLKIDLEKAQTLAGHLLDSAKNLLETTEIQLDLSRRIEKVYVYAHMKND
QDTTVAKYQEYQSKASALYARFSEVFSFYEPEFMTILPSQFDDFLKEEPRLEDYHHFFEKLLKNKEHVLSQAEEELLAGA
QEIFNGAEETFGLLDNADIQFPIIKDEKGREIEITHGNFIHLMESKDRQVRQAAYEALYSTYEQFQHTYAKTLQTNVKVN
NYKARVHHYTSARQAAMAANFIPETVYDTLLEVVNRKLPLLHRYLELRKKILGLETLKMYDVYTPLSQTDLSVNYDQALE
KAEEVLSIFGKEYSDYVHQAFSERWIDVHVNKGKRSGAYSGGAYDTKAFMLLNWQDNLDNLYTLVHETGHSLHSTLTRKN
QPYVYGDYSIFLAEIASTTNENILTEALLKDVTDEKERFAILNNYLDGFRGTIFRQSQFAEFEHAIYQADQAGDVLTSDY
LNNLYGQLNEKYYGLAKEDNYYIQYEWARIPHFYYNYYVYQYATGFAAASYLANKIVHGQQKDIDNYLSYLKAGNSDYPL
NVIAKAGVDMTNEVYLEDAFTIFEERLTELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1121992 EL147_RS03255 WP_007894828.1 675850..677652(-) (pepF) [Streptococcus pseudoporcinus strain NCTC13786]
ATGGCAGATAATAGAAGTCATTTAGAAGAAAAATACACATGGGATTTGACTACTATCTTTGACAGTGATCAAAAATGGGA
AACGGAAGTTAATGACTTAAAAATAGATCTAGAAAAAGCTCAGACTTTAGCTGGACACCTTTTAGATTCAGCAAAAAATT
TATTGGAAACAACGGAAATCCAGTTGGATTTATCAAGACGTATTGAAAAGGTCTATGTCTACGCTCACATGAAAAATGAC
CAAGATACGACTGTTGCAAAATACCAGGAATACCAATCAAAAGCATCCGCTTTATATGCGAGGTTTAGTGAAGTTTTTTC
ATTTTATGAGCCAGAATTTATGACTATTCTTCCAAGCCAATTTGACGATTTTCTTAAGGAAGAACCTAGGTTGGAAGATT
ATCATCATTTCTTTGAAAAGCTTCTTAAAAATAAAGAACATGTTCTTAGTCAAGCTGAGGAGGAATTATTAGCTGGTGCT
CAAGAAATTTTTAATGGTGCTGAAGAGACCTTTGGCCTCTTAGACAATGCTGATATTCAATTTCCAATTATCAAAGATGA
AAAAGGACGAGAGATTGAAATTACGCACGGTAATTTTATCCATTTGATGGAATCTAAAGATCGTCAAGTGCGTCAAGCTG
CTTATGAAGCCTTATACAGTACTTATGAGCAATTTCAACATACTTATGCTAAAACACTTCAAACCAATGTTAAAGTAAAC
AATTATAAGGCGCGTGTTCATCATTATACGTCTGCTCGTCAAGCAGCTATGGCCGCAAACTTTATTCCTGAAACAGTTTA
CGATACTCTTTTAGAAGTTGTTAACCGTAAGCTCCCATTACTGCATCGGTATTTAGAGTTAAGAAAAAAAATATTAGGTC
TAGAGACCTTAAAAATGTATGATGTCTATACACCCTTATCTCAAACCGACCTATCTGTCAATTATGATCAAGCTTTGGAA
AAAGCCGAGGAAGTCTTATCTATTTTTGGAAAAGAGTATAGTGATTATGTTCATCAAGCTTTTTCGGAAAGATGGATTGA
TGTCCATGTTAATAAAGGAAAAAGATCTGGTGCTTATTCAGGTGGGGCTTACGATACCAAAGCCTTTATGCTATTAAATT
GGCAGGATAATTTAGATAACCTCTATACTTTGGTGCATGAAACGGGCCATAGTTTACATTCAACTTTAACACGTAAGAAC
CAACCTTATGTTTATGGAGATTACAGTATATTTTTGGCAGAGATTGCTTCAACGACGAATGAAAACATTTTAACTGAGGC
ATTATTGAAAGATGTTACAGATGAAAAAGAACGCTTTGCTATTCTAAATAATTATTTAGATGGCTTTAGAGGAACTATTT
TCCGCCAAAGTCAATTTGCTGAATTTGAGCATGCTATTTATCAGGCTGACCAAGCTGGTGACGTCTTAACAAGTGATTAT
TTAAATAACTTGTATGGACAATTGAATGAAAAATATTATGGTTTAGCCAAGGAAGACAACTACTATATTCAATATGAATG
GGCGCGGATTCCTCACTTCTATTACAATTACTACGTTTATCAATATGCAACAGGTTTTGCGGCGGCAAGCTATCTAGCAA
ACAAAATTGTTCATGGGCAACAAAAGGATATTGATAACTATCTGTCTTATCTTAAAGCCGGCAATTCTGATTACCCATTG
AATGTTATAGCAAAAGCCGGAGTGGATATGACTAACGAAGTTTATTTAGAAGATGCCTTTACTATTTTTGAAGAACGTCT
TACAGAATTAGAGGCTCTAGTTGAGAAGGGGGTCCATCTCTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71

100

0.71

Multiple sequence alignment