Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   EL140_RS06815 Genome accession   NZ_LR134336
Coordinates   1358908..1360140 (-) Length   410 a.a.
NCBI ID   WP_002874765.1    Uniprot ID   A0A1X1GRP7
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1353908..1365140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS06785 (NCTC11427_01341) - 1354098..1355066 (+) 969 WP_000081039.1 NAD(P)/FAD-dependent oxidoreductase -
  EL140_RS06790 (NCTC11427_01342) whiA 1355098..1356009 (-) 912 WP_000011271.1 DNA-binding protein WhiA -
  EL140_RS06795 (NCTC11427_01343) - 1356006..1356983 (-) 978 WP_001231065.1 YvcK family protein -
  EL140_RS06800 (NCTC11427_01344) rapZ 1356980..1357870 (-) 891 WP_000163039.1 RNase adapter RapZ -
  EL140_RS06805 (NCTC11427_01345) - 1357922..1358302 (-) 381 WP_001140428.1 RidA family protein -
  EL140_RS06810 (NCTC11427_01346) yihA 1358312..1358899 (-) 588 WP_000405203.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EL140_RS06815 (NCTC11427_01347) clpX 1358908..1360140 (-) 1233 WP_002874765.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EL140_RS06825 (NCTC11427_01349) - 1360342..1360848 (-) 507 WP_000162309.1 dihydrofolate reductase -
  EL140_RS06830 (NCTC11427_01350) cmk 1360967..1361641 (-) 675 WP_000849411.1 (d)CMP kinase -
  EL140_RS06835 (NCTC11427_01351) - 1361651..1362160 (-) 510 WP_000410193.1 SAG1386/EF1546 family surface-associated protein -
  EL140_RS06840 - 1362206..1362409 (+) 204 WP_002874767.1 ferredoxin -
  EL140_RS06845 (NCTC11427_01352) - 1362485..1363469 (-) 985 Protein_1289 glycosyltransferase family 2 protein -
  EL140_RS06850 (NCTC11427_01353) galE 1363453..1364472 (-) 1020 WP_001156544.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45686.26 Da        Isoelectric Point: 4.4581

>NTDB_id=1121856 EL140_RS06815 WP_002874765.1 1358908..1360140(-) (clpX) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1121856 EL140_RS06815 WP_002874765.1 1358908..1360140(-) (clpX) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGGGAGGAGTTGGCCGAGGAAG
TCTTGGCAGATTTGTCTGAAGTACCAAAACCAATCGAACTCCTCAATATCTTGAATCACTATGTGATTGGTCAGGATCGT
GCCAAACGTGCCTTGGCAGTGGCTGTATACAATCACTACAAACGCATCAATTTCCACGATACGCGTGAAGAGTCTGAAGA
TGTGGATTTGCAGAAGTCAAATATCTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCTTGGCTCAGACCTTGGCTA
AGAGCTTGAACGTGCCTTTTGCTATCGCAGATGCGACAGCTCTGACTGAGGCTGGGTATGTGGGTGAGGACGTGGAAAAC
ATCCTCCTCAAACTATTGCAGGCTGCTGACTTTAATATCGAACGTGCAGAACGCGGGATTATCTACGTGGATGAAATTGA
CAAAATTGCCAAGAAGAGCGAGAATGTGTCTATCACACGTGACGTTTCGGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTCGCTAGCGTGCCACCTCAAGGAGGACGCAAACATCCACAACAAGAGATGATTCAGGTGGATACC
AAGAATATCCTCTTTATCGTAGGTGGTGCTTTTGATGGCATCGAAGAAATCGTTAAACAACGTCTGGGTGAAAAAGTTAT
CGGTTTTGGCCAAAATAACAAGGCGATTGATGAAAACAGCTCCTACATGCAAGAAATCATCGCAGAAGACATTCAAAAAT
TCGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTCTTTGCTGCTCTTGAGCAATTGACGGTCGATGACTTGGTTCGC
ATCTTGAAAGAACCAAGAAATGCCTTGGTGAAACAATACCAAACCTTACTTTCTTATGATGACGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCCATCGAACGCAAAACTGGTGCGCGTGGTCTTCGCTCAATCATTGAAG
AAACCATGCTAGATGTTATGTTTGAAGTGCCAAGTCAGGAAAATGTGAAATTGGTCCGCATCACAAAAGAAGCTGTTGAT
GGAACGGAAAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GRP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

87.073

100

0.871
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment