Detailed information NTG1121771

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: EL332_RS14125
• Genome accession: NZ_LR134334
• Coordinates: 3232653..3233981 (+)
• Length: 442 a.a.
• NCBI ID: WP_124325552.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain NCTC7357
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3227653..3238981

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL332_RS14105 (NCTC7357_02823)	pgeF	3229151..3229876 (-)	726	WP_124303641.1	peptidoglycan editing factor PgeF	-
EL332_RS14110 (NCTC7357_02824)	rluD	3229873..3230835 (-)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
EL332_RS14115 (NCTC7357_02825)	-	3230988..3232010 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
EL332_RS14120 (NCTC7357_02826)	-	3232145..3232378 (+)	234	WP_007924721.1	PP0621 family protein	-
EL332_RS14125 (NCTC7357_02827)	pilR	3232653..3233981 (+)	1329	WP_124325552.1	sigma-54-dependent transcriptional regulator	Regulator
EL332_RS14130 (NCTC7357_02828)	thiO	3233978..3235078 (-)	1101	WP_124325553.1	glycine oxidase ThiO	-
EL332_RS14135 (NCTC7357_02829)	-	3235133..3235534 (-)	402	WP_097305151.1	type IV pilin protein	-
EL332_RS14140 (NCTC7357_02830)	-	3235548..3238619 (-)	3072	WP_124325554.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48824.16 Da
• Isoelectric Point: 8.7307

>NTDB_id=1121771 EL332_RS14125 WP_124325552.1 3232653..3233981(+) (pilR) [Pseudomonas chlororaphis strain NCTC7357]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLARESFDLCLSDLHLPDGTGLELLEHIQRRRLRMPLA
ILSACARQETAVQALKAGAIDFLSKPVALARLRELLNSALPGSTPAPPATGPLLGDSAAMHKLRGQIGKLAQSQASVYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVHAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTSHSAHPAIAPGAAQVIDLEDHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=1121771 EL332_RS14125 WP_124325552.1 3232653..3233981(+) (pilR) [Pseudomonas chlororaphis strain NCTC7357]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGTACCTTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAAGTTTCGACCTGTGCTTGA
GCGACCTGCATCTGCCCGACGGCACGGGACTGGAATTACTCGAGCATATCCAGCGCCGTCGGCTGCGAATGCCGCTGGCA
ATACTCAGTGCCTGCGCCCGCCAGGAAACCGCGGTCCAAGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAACTGCTGAACAGCGCCCTGCCCGGATCGACACCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGGCAAACTGGCCCAGAGCCAGGCATCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCCATCCACGACCAGGGACCACGAGCCAGCCACGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTCCAGGAGAAGGCGGTACGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCGTTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGACCTCTACTACCGCC
TGAACGTGATCGAACTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGATATCGAGCCCTTGGCCACAGCCATCCTCGAG
CGACTGGCGCAGGGCGACGGCCAACAACTGGCACGGCTTCAGCCAAGTGCTCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCCATACCCTGTGCGAGAACCGCCGGATCGAAGCGCGCGATC
TGCGCCTGACGTCACACAGCGCCCATCCGGCCATCGCGCCCGGAGCGGCCCAGGTGATCGACCTTGAAGACCATCTGCAA
GAAATCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.778	100	0.69
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457