Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL133_RS03035 Genome accession   NZ_LR134323
Coordinates   589325..591124 (+) Length   599 a.a.
NCBI ID   WP_006739145.1    Uniprot ID   -
Organism   Streptococcus urinalis strain NCTC13766     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 584325..596124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS03005 (NCTC13766_00613) queA 584579..585607 (-) 1029 WP_006739459.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  EL133_RS03010 (NCTC13766_00614) nagB 585787..586491 (+) 705 WP_006740401.1 glucosamine-6-phosphate deaminase -
  EL133_RS03015 (NCTC13766_00615) - 586514..587470 (-) 957 WP_006738743.1 glutathione S-transferase family protein -
  EL133_RS03020 (NCTC13766_00616) - 587560..588273 (+) 714 WP_006740060.1 pseudouridine synthase -
  EL133_RS03030 (NCTC13766_00618) - 588327..589277 (+) 951 Protein_577 competence protein CoiA -
  EL133_RS03035 (NCTC13766_00619) pepF 589325..591124 (+) 1800 WP_006739145.1 oligoendopeptidase F Regulator
  EL133_RS03040 (NCTC13766_00620) - 591281..591832 (+) 552 WP_006739481.1 HAD-IA family hydrolase -
  EL133_RS03045 (NCTC13766_00621) - 592014..593249 (+) 1236 WP_006738770.1 OFA family MFS transporter -
  EL133_RS03050 (NCTC13766_00622) - 593349..594056 (+) 708 WP_006739116.1 O-methyltransferase -
  EL133_RS03055 (NCTC13766_00623) prsA 594114..595055 (+) 942 WP_006739739.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69518.02 Da        Isoelectric Point: 5.1688

>NTDB_id=1121528 EL133_RS03035 WP_006739145.1 589325..591124(+) (pepF) [Streptococcus urinalis strain NCTC13766]
MSDNRSHLLKDETWDLSTVFPTDEAWEVELNLLYTELDSAKIYKGKLKESASVLVSITENYLDLLRRIEKVYVYASMKND
QDTTVAKYQEFQAKASSLYATFSEVFSFYEPELMSLETNVFSKFLEEEPALKPYKHYFDKIFAQKKHVLTQKEEALLAQA
QEIFNGASETFGILDNADIVFPTVHDENDNEVSLTHGNFISLMESKNRSVRKEAYEALYKTYQQYQHTYAKTLQTNVKVQ
NYQAKVRNYQSARQAAMSANFIPESVYDTLLEAVNNHLPLLHRYMKLRAKILDITDLKMYDVYTSLSDTDMAFTYDQAIE
KSKKVLSVFGDDYLKRVEKAFSERWIDVRVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTREN
QPYVYGDYSLFLAEIASTTNENIMTETLLKESQSDTERFAILNHYLDGFKGTVFRQTQFAEFEHQIHIADQNGQVLTSEF
LNNLYANLNEKYYGLSKEDNPLIQYEWARIPHFYYNYYVYQYATGFAAASYLAEKIVHGTTEDKIKYLDYLKSGNSDYSL
NVIAKAGVDMTTVDYLNQAFKVFEKRLTELEKLVEKGIR

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=1121528 EL133_RS03035 WP_006739145.1 589325..591124(+) (pepF) [Streptococcus urinalis strain NCTC13766]
ATGTCAGATAATCGTTCACATTTATTAAAAGATGAAACTTGGGACTTATCAACAGTATTTCCTACAGATGAAGCTTGGGA
GGTTGAACTTAATCTTCTGTATACTGAACTTGATTCAGCTAAAATTTATAAAGGAAAATTAAAAGAAAGTGCAAGTGTAC
TTGTAAGTATCACTGAAAACTATCTTGACCTTCTTAGACGAATTGAAAAAGTTTATGTATATGCCTCAATGAAAAATGAT
CAGGATACAACAGTTGCAAAATATCAAGAATTTCAGGCTAAAGCCTCCTCTTTATATGCTACGTTTAGTGAGGTATTCTC
ATTTTATGAACCAGAGTTGATGTCTTTAGAGACGAATGTATTTTCAAAATTTCTAGAAGAAGAACCTGCGCTTAAGCCTT
ATAAACATTATTTTGATAAAATCTTTGCTCAAAAAAAACATGTACTCACACAGAAGGAAGAAGCACTACTAGCTCAAGCA
CAAGAAATTTTTAATGGTGCAAGTGAAACATTCGGTATTCTAGATAATGCTGATATTGTTTTTCCTACAGTTCATGATGA
AAATGATAATGAAGTTTCTTTAACACATGGTAATTTTATTAGCTTAATGGAATCTAAAAATCGCAGTGTTCGTAAAGAAG
CTTATGAAGCGCTCTACAAAACTTATCAACAATATCAACATACCTATGCAAAAACTTTACAAACAAATGTTAAAGTTCAA
AATTACCAAGCTAAAGTTAGAAATTACCAGTCAGCAAGACAAGCTGCTATGTCAGCTAATTTCATTCCTGAAAGTGTTTA
TGATACGCTACTTGAAGCAGTTAATAATCATCTCCCTTTATTGCATCGATACATGAAACTTAGAGCGAAGATATTAGATA
TTACTGATTTAAAAATGTATGATGTTTATACTTCTTTATCAGATACTGATATGGCTTTTACCTATGACCAAGCTATTGAA
AAATCTAAAAAAGTTTTGTCTGTCTTTGGAGATGACTATTTGAAACGTGTTGAAAAAGCTTTTTCAGAAAGATGGATTGA
TGTTCGAGTTAATAAAGGAAAACGTTCTGGTGCTTATTCAGGTGGTTCATACGATACCAACGCATTTATGTTATTAAATT
GGCAAGATACACTAGATAATTTATATACACTGGTACACGAAACAGGACATAGTTTGCATTCAACATTTACAAGAGAAAAT
CAACCTTATGTGTATGGGGATTATAGTCTTTTCTTAGCAGAAATTGCATCAACAACAAATGAAAATATTATGACTGAAAC
ACTTTTAAAAGAGTCACAATCAGATACTGAAAGATTTGCTATTTTAAATCATTATTTAGATGGCTTCAAAGGAACAGTTT
TCCGTCAAACACAATTTGCTGAATTTGAACATCAAATTCATATTGCTGATCAAAATGGTCAAGTACTAACAAGCGAATTC
TTGAATAATCTCTATGCTAATCTAAATGAAAAATATTATGGTTTATCAAAAGAAGATAATCCCTTAATTCAATATGAATG
GGCTAGAATACCTCATTTTTACTATAACTATTATGTTTATCAGTATGCAACAGGATTCGCAGCAGCTAGTTATCTTGCTG
AGAAAATTGTTCATGGAACGACAGAAGATAAAATAAAATATTTAGATTATCTAAAATCGGGTAACTCAGACTATTCTTTA
AATGTCATTGCAAAAGCAGGTGTGGATATGACAACAGTAGATTATTTGAATCAAGCCTTTAAAGTGTTCGAAAAAAGACT
TACAGAGTTAGAAAAACTTGTTGAAAAAGGTATAAGATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.114

100

0.681

Multiple sequence alignment