Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EL133_RS00320 Genome accession   NZ_LR134323
Coordinates   62803..63516 (-) Length   237 a.a.
NCBI ID   WP_006740627.1    Uniprot ID   -
Organism   Streptococcus urinalis strain NCTC13766     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 57803..68516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS11270 (NCTC13766_00058) - 58723..58875 (+) 153 WP_006739610.1 hypothetical protein -
  EL133_RS11500 - 58884..59822 (+) 939 Protein_56 Gfo/Idh/MocA family protein -
  EL133_RS00300 (NCTC13766_00061) - 59832..60329 (+) 498 WP_006738530.1 GNAT family N-acetyltransferase -
  EL133_RS00305 (NCTC13766_00062) nrdG 60347..60955 (+) 609 WP_006739155.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  EL133_RS00310 (NCTC13766_00063) yaaA 61085..61822 (-) 738 WP_006740489.1 peroxide stress protein YaaA -
  EL133_RS00315 (NCTC13766_00064) - 61860..62716 (-) 857 Protein_60 VOC family protein -
  EL133_RS00320 (NCTC13766_00065) treR 62803..63516 (-) 714 WP_006740627.1 trehalose operon repressor Regulator
  EL133_RS00325 (NCTC13766_00066) treP 63735..65717 (+) 1983 WP_006740135.1 PTS system trehalose-specific EIIBC component -
  EL133_RS00330 (NCTC13766_00067) treC 65787..67415 (+) 1629 WP_006738831.1 alpha,alpha-phosphotrehalase -
  EL133_RS00335 (NCTC13766_00068) - 67440..68420 (-) 981 WP_006740242.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27512.62 Da        Isoelectric Point: 8.3474

>NTDB_id=1121503 EL133_RS00320 WP_006740627.1 62803..63516(-) (treR) [Streptococcus urinalis strain NCTC13766]
MKKYQHIYQQIETDILTENYKDGDFLPTEHDLSQKYKVSRDTIRKALKLLENTGLITKTQGRGSQITKNERILFPVAELT
SYQELVATFSMNSKTNVIAIDKVIIDESLAKITGFRLHQIVWRVTRQRVVDGIASVLDIDYLDKELIPKMTREIAEHSIY
AYLESDLGLPIDFALKEITIDHISDKDKILLDLGSENHVVSVKSKVYLSNNQQFQFTESRHKLEKFKFIDMARRHPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1121503 EL133_RS00320 WP_006740627.1 62803..63516(-) (treR) [Streptococcus urinalis strain NCTC13766]
ATGAAAAAATACCAACACATTTACCAACAAATTGAAACAGATATCCTGACAGAAAACTATAAAGATGGTGATTTTCTACC
AACTGAACATGACTTAAGTCAAAAGTATAAGGTCAGTCGAGATACTATTCGAAAAGCTTTAAAATTACTTGAAAACACTG
GTTTAATTACTAAAACTCAAGGGAGAGGAAGTCAAATAACCAAAAATGAACGAATCTTATTTCCTGTTGCTGAACTAACA
AGTTACCAAGAGTTAGTAGCTACATTTAGTATGAATTCTAAGACGAATGTGATTGCTATCGACAAAGTCATTATTGATGA
ATCACTTGCTAAAATAACTGGGTTTAGACTACATCAAATCGTTTGGCGTGTCACTCGTCAACGTGTTGTTGATGGCATTG
CATCTGTTCTTGATATTGATTACCTTGATAAAGAATTAATTCCAAAAATGACCAGAGAAATAGCTGAACACTCCATTTAT
GCTTATCTAGAATCAGATTTGGGGTTACCCATCGATTTTGCTTTAAAGGAAATCACAATTGATCATATTTCTGATAAAGA
CAAAATCTTGCTTGACCTTGGTAGTGAAAATCATGTTGTCTCTGTCAAATCAAAAGTATACTTATCAAATAACCAACAAT
TTCAGTTTACTGAAAGTCGTCATAAGTTAGAAAAATTCAAATTTATTGATATGGCAAGACGTCACCCAAAATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(92-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

69.362

99.156

0.688

Multiple sequence alignment