Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL130_RS03470 Genome accession   NZ_LR134320
Coordinates   675370..676770 (+) Length   466 a.a.
NCBI ID   WP_019320466.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCTC10832     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 670370..681770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS03440 (NCTC10832_00648) - 671008..671544 (+) 537 WP_002277594.1 5-formyltetrahydrofolate cyclo-ligase -
  EL130_RS03445 (NCTC10832_00649) - 671531..672202 (+) 672 WP_019320465.1 rhomboid family intramembrane serine protease -
  EL130_RS03450 (NCTC10832_00650) galU 672224..673144 (-) 921 WP_002262524.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EL130_RS03455 (NCTC10832_00651) - 673146..674165 (-) 1020 WP_002262523.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  EL130_RS03460 (NCTC10832_00652) - 674489..674932 (+) 444 WP_002262522.1 dUTP diphosphatase -
  EL130_RS03465 (NCTC10832_00653) - 674942..675412 (+) 471 WP_002265790.1 cysteine hydrolase family protein -
  EL130_RS03470 (NCTC10832_00654) radA 675370..676770 (+) 1401 WP_019320466.1 DNA repair protein RadA Machinery gene
  EL130_RS03475 (NCTC10832_00655) - 676860..677354 (+) 495 WP_002262519.1 beta-class carbonic anhydrase -
  EL130_RS03480 (NCTC10832_00656) - 677543..678256 (+) 714 WP_002262518.1 TIGR00266 family protein -
  EL130_RS03485 (NCTC10832_00657) gltX 678543..680000 (+) 1458 WP_002296082.1 glutamate--tRNA ligase -
  EL130_RS03490 (NCTC10832_00658) - 680116..680640 (+) 525 WP_002282227.1 transcription repressor NadR -
  EL130_RS03495 (NCTC10832_00659) - 680707..681255 (+) 549 WP_002296079.1 hypothetical protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51091.66 Da        Isoelectric Point: 7.5453

>NTDB_id=1121417 EL130_RS03470 WP_019320466.1 675370..676770(+) (radA) [Streptococcus mutans strain NCTC10832]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEVEVAVVKNARVSLTGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVIGVTTVSEVLKKVFN

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=1121417 EL130_RS03470 WP_019320466.1 675370..676770(+) (radA) [Streptococcus mutans strain NCTC10832]
ATGGCAGATTGCTGGAATAGTAACGAGAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGGTTGAAGTTGCTG
TGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGTGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGTGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAACATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGACCTATTTTAGCGGAAGTA
CAAGCCCTAGTAACACCAACTGTTTTTGGTAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAATTGGTG
TGACAACTGTTAGTGAAGTCTTAAAAAAGGTATTTAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-231)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

89.159

96.996

0.865
  radA Streptococcus pneumoniae D39

89.159

96.996

0.865
  radA Streptococcus pneumoniae R6

89.159

96.996

0.865
  radA Streptococcus pneumoniae TIGR4

89.159

96.996

0.865
  radA Streptococcus mitis SK321

89.159

96.996

0.865
  radA Streptococcus mitis NCTC 12261

88.938

96.996

0.863
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

97.21

0.603

Multiple sequence alignment