Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   EL257_RS19725 Genome accession   NZ_LR134318
Coordinates   4353502..4354137 (-) Length   211 a.a.
NCBI ID   WP_172604563.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain NCTC9428     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4348502..4359137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL257_RS19690 (NCTC9428_03925) - 4348860..4349330 (-) 471 WP_126365436.1 (2Fe-2S)-binding protein -
  EL257_RS19695 (NCTC9428_03926) murB 4349618..4350637 (-) 1020 WP_126365438.1 UDP-N-acetylmuramate dehydrogenase -
  EL257_RS19700 (NCTC9428_03927) - 4350634..4351098 (-) 465 WP_126365440.1 low molecular weight protein-tyrosine-phosphatase -
  EL257_RS19705 (NCTC9428_03928) kdsB 4351098..4351862 (-) 765 WP_126365442.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EL257_RS19710 (NCTC9428_03929) - 4351859..4352044 (-) 186 WP_003174668.1 Trm112 family protein -
  EL257_RS19715 (NCTC9428_03930) lpxK 4352067..4353077 (-) 1011 WP_126365444.1 tetraacyldisaccharide 4'-kinase -
  EL257_RS19720 (NCTC9428_03931) - 4353077..4353505 (-) 429 WP_039760196.1 ExbD/TolR family protein -
  EL257_RS19725 (NCTC9428_03932) exbB 4353502..4354137 (-) 636 WP_172604563.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  EL257_RS19730 (NCTC9428_03933) comA 4354239..4356473 (-) 2235 WP_126365446.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EL257_RS19735 (NCTC9428_03934) - 4356610..4357128 (+) 519 WP_126365448.1 DUF2062 domain-containing protein -
  EL257_RS19740 (NCTC9428_03935) - 4357293..4358072 (-) 780 WP_126365450.1 ABC transporter permease -
  EL257_RS19745 (NCTC9428_03936) - 4358069..4359001 (-) 933 WP_126365452.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.08 Da        Isoelectric Point: 6.8770

>NTDB_id=1121323 EL257_RS19725 WP_172604563.1 4353502..4354137(-) (exbB) [Pseudomonas fluorescens strain NCTC9428]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLTEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1121323 EL257_RS19725 WP_172604563.1 4353502..4354137(-) (exbB) [Pseudomonas fluorescens strain NCTC9428]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTGTGGATCAAGGACA
AACAGCTCAACAAGGAAAAGCTCAAGGAGCTGCGCGCCAATTCGCCGTTGGGAGAAATTCTTGCGGCAGGCCTGGCGAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAATGCCCTCGGCACCATCGCTGCCATGGCGCCGTTGCTGGGTCTGCTCGGCACTGTGCTGGGCATGATCGATATTTTCA
GCGCCTTCACCGGCTCTGGCATGACTACCAATGCGTCAGTCCTGGCGGGCGGTATTTCCAAAGCGTTGATCACCACGGCG
GCGGGCTTGATGGTCGGTATTCCAGCGGTGTTCTTCCACCGTTTCCTGCAGCGCCGCATTGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAACTGGTTGAAGTGGTGCAGGGTGACCGTGATGTCGACCTGACCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment