Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   EL136_RS11410 Genome accession   NZ_LR134317
Coordinates   1912528..1912626 (-) Length   32 a.a.
NCBI ID   WP_021320241.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6180     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1907528..1917626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL136_RS09100 (NCTC6180_01866) - 1908564..1910345 (-) 1782 WP_154804244.1 acyltransferase family protein -
  EL136_RS09105 (NCTC6180_01867) - 1910342..1910743 (-) 402 WP_012514718.1 MORN repeat-containing protein -
  EL136_RS09110 (NCTC6180_01868) - 1910749..1911207 (-) 459 WP_012678781.1 low molecular weight protein-tyrosine-phosphatase -
  EL136_RS09115 (NCTC6180_01869) ruvB 1911493..1912494 (-) 1002 WP_154804245.1 Holliday junction branch migration DNA helicase RuvB -
  EL136_RS11410 (NCTC6180_01870) comS 1912528..1912626 (-) 99 WP_021320241.1 quorum-sensing system DWW-type pheromone Regulator
  EL136_RS09120 (NCTC6180_01871) comR 1912709..1913623 (-) 915 WP_043039892.1 helix-turn-helix domain-containing protein Regulator
  EL136_RS09125 (NCTC6180_01872) purB 1913922..1915214 (-) 1293 WP_043039910.1 adenylosuccinate lyase -
  EL136_RS09130 (NCTC6180_01873) - 1915807..1916031 (-) 225 WP_014622100.1 hypothetical protein -
  EL136_RS09135 (NCTC6180_01874) purK 1916046..1917119 (-) 1074 WP_043039891.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  EL136_RS09140 (NCTC6180_01875) purE 1917106..1917594 (-) 489 WP_012514711.1 5-(carboxyamino)imidazole ribonucleotide mutase -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3937.66 Da        Isoelectric Point: 8.5430

>NTDB_id=1121311 EL136_RS11410 WP_021320241.1 1912528..1912626(-) (comS) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
MFKKYQYYLFLAALFLLHSAQLLSDIDWWRVG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=1121311 EL136_RS11410 WP_021320241.1 1912528..1912626(-) (comS) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
ATGTTTAAAAAATACCAATACTATCTGTTTTTAGCTGCTTTATTTCTACTTCATTCTGCCCAATTACTTAGTGATATTGA
CTGGTGGCGTGTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

51.613

96.875

0.5
  comS Streptococcus pyogenes MGAS315

37.5

100

0.375

Multiple sequence alignment