Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   VV93_RS10455 Genome accession   NZ_CP009261
Coordinates   2265420..2267309 (-) Length   629 a.a.
NCBI ID   WP_235203686.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 93U204     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2260420..2272309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV93_RS10430 (VV93_v1c20620) - 2260755..2261543 (-) 789 WP_039554275.1 diguanylate cyclase -
  VV93_RS10435 (VV93_v1c20630) kdsB 2261714..2262469 (-) 756 WP_039554276.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VV93_RS10440 (VV93_v1c20640) - 2262469..2262648 (-) 180 WP_011079973.1 Trm112 family protein -
  VV93_RS10445 (VV93_v1c20650) lpxK 2262629..2263636 (-) 1008 WP_011150832.1 tetraacyldisaccharide 4'-kinase -
  VV93_RS10450 (VV93_v1c20660) msbA 2263636..2265387 (-) 1752 WP_039554277.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  VV93_RS10455 (VV93_v1c20670) comEC 2265420..2267309 (-) 1890 WP_235203686.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VV93_RS24660 - 2267404..2267670 (-) 267 WP_235203687.1 hypothetical protein -
  VV93_RS10460 (VV93_v1c20680) - 2267679..2268188 (+) 510 WP_011079969.1 DUF2062 domain-containing protein -
  VV93_RS10465 (VV93_v1c20690) lolE 2268384..2269628 (-) 1245 WP_011150837.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  VV93_RS10470 (VV93_v1c20700) lolD 2269640..2270323 (-) 684 WP_011079967.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  VV93_RS10475 (VV93_v1c20710) lolC 2270316..2271521 (-) 1206 WP_039554278.1 lipoprotein-releasing ABC transporter permease subunit LolC -

Sequence

Protein


Download         Length: 629 a.a.        Molecular weight: 70724.26 Da        Isoelectric Point: 7.8241

>NTDB_id=112131 VV93_RS10455 WP_235203686.1 2265420..2267309(-) (comEC) [Vibrio vulnificus strain 93U204]
MRLISPIPLGQGDQIVAHVALKRVYGLLNEAGFDAERFAVSQGIVGRATIDDSRSWRLVSVKGGRQALIEKAQQLLVRSD
HTGYLLGLSFGLRDDITDEQWQQLKQSGLIHLLSISGLHIGMAFGIGYWLGHWLRFGRLTLVWLPLAIGLSLSWSYAWLA
GFTLPTQRAIVFVTLVALFSFTSGQVGRWTVLLLALAFCLAMSPFSALSTSLWLSFLAVSCVFLVVDLRESSSSWIGKMK
SVFCIQGMLLLYLAPVTAYFFSGLSLAAWLYNFLFIPWFSLVVVPAIFVALVLTALNIMSAASMLWQLADLSLWPLTYAM
PYAHLGWWGLSSFQVVLVALCALAVMMRHVIRWQLSAVLIILLSTSSLLIHPLSRTRIDVLDVGHGLAVLIEKDGKTLLY
DTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDHAGGLPYLQQNMRPQWVRSSHYLSDFPCVKGHDFEWQGLKM
TVLWPPRQVTRAYNPHSCVIRMEDEENQFSFLMTGDIDALAEWILIREPEQLNSDVVLVPHHGSQTSSIEPFVNAVQADV
AIASLAKGNQWGMPQPQVVETYRRHRTQWFDTGELGQITLYVEQRNWRIVSRRDTFNAWYRQMLRNQVE

Nucleotide


Download         Length: 1890 bp        

>NTDB_id=112131 VV93_RS10455 WP_235203686.1 2265420..2267309(-) (comEC) [Vibrio vulnificus strain 93U204]
GTGCGTTTGATCTCACCCATTCCTCTTGGGCAGGGGGATCAAATCGTAGCGCATGTGGCTCTAAAACGAGTCTATGGGTT
ACTCAATGAAGCAGGGTTTGATGCCGAACGTTTTGCTGTCAGCCAAGGCATCGTTGGACGGGCAACTATTGATGATTCTC
GCTCTTGGCGTTTGGTCTCCGTGAAGGGAGGGCGACAAGCGCTGATCGAAAAAGCTCAGCAGCTACTGGTTCGTAGCGAT
CATACCGGTTATTTACTTGGCTTAAGCTTTGGTCTTCGCGACGACATTACCGACGAGCAATGGCAGCAACTCAAGCAAAG
TGGTTTGATACATCTACTTTCTATCTCAGGGCTGCACATTGGTATGGCTTTTGGTATCGGTTACTGGCTCGGGCATTGGT
TGCGTTTTGGACGGCTTACTCTTGTTTGGCTGCCGTTGGCTATTGGACTGAGTCTCAGTTGGAGTTATGCGTGGCTGGCT
GGTTTTACTCTGCCAACGCAAAGAGCCATTGTCTTTGTCACGTTAGTCGCCTTGTTCTCGTTTACGTCGGGGCAAGTCGG
TCGCTGGACAGTCTTGCTATTGGCACTGGCCTTCTGTCTTGCGATGTCGCCATTTTCTGCCCTTTCTACCAGTCTCTGGC
TATCGTTTCTTGCTGTCAGTTGCGTCTTTCTGGTGGTTGATCTCCGTGAGTCGTCTTCATCTTGGATTGGCAAAATGAAA
AGCGTATTTTGCATCCAAGGTATGCTGCTGCTTTATCTCGCACCTGTGACTGCTTACTTCTTTTCCGGTTTGAGTTTAGC
CGCCTGGCTGTACAACTTCCTATTTATCCCCTGGTTTAGCTTGGTGGTGGTGCCTGCCATATTTGTCGCACTCGTGCTGA
CGGCGCTGAATATTATGTCTGCGGCCAGTATGCTATGGCAGTTAGCGGATTTAAGTTTATGGCCATTAACTTACGCTATG
CCTTACGCCCACTTAGGCTGGTGGGGACTCTCCTCATTTCAGGTGGTGTTGGTCGCGTTGTGCGCGCTCGCTGTGATGAT
GAGACATGTTATTCGCTGGCAACTCTCTGCTGTTCTGATCATTTTGCTCAGCACTTCTTCACTGTTGATTCATCCTCTTT
CTCGCACCCGAATTGACGTTTTAGATGTTGGCCATGGGCTCGCTGTATTGATTGAGAAAGACGGTAAAACGCTGCTTTAT
GACACTGGAAAGTCTTGGCATGGTGGCAGTATTGCACAGCAAGTGATTGAGCCTATTTTATTGAGTCGGGGTAGTAGAAG
CCTTGATGGGGTTATCATCAGTCATCAAGATGACGATCATGCAGGCGGCTTGCCCTATTTGCAGCAAAACATGCGCCCAC
AATGGGTAAGGAGTAGTCATTACTTGAGTGATTTTCCGTGTGTTAAAGGTCACGACTTTGAGTGGCAAGGGCTCAAAATG
ACCGTGCTTTGGCCGCCAAGGCAAGTGACTCGTGCCTACAATCCCCACTCCTGTGTGATTCGTATGGAGGATGAGGAAAA
TCAGTTTTCATTTTTGATGACTGGCGATATTGACGCTTTGGCTGAGTGGATCCTAATTCGTGAACCTGAACAGCTAAACA
GCGATGTGGTATTGGTGCCGCATCATGGCAGTCAAACTTCGTCGATTGAGCCTTTTGTGAACGCCGTCCAGGCAGATGTG
GCAATCGCCTCGTTGGCAAAAGGAAATCAGTGGGGGATGCCACAACCGCAAGTGGTCGAGACTTATCGACGACATCGCAC
GCAGTGGTTTGATACCGGTGAGCTGGGTCAGATAACGTTGTATGTGGAACAGAGAAACTGGCGAATCGTCTCAAGACGCG
ACACTTTCAACGCTTGGTATAGGCAGATGCTGCGTAACCAAGTAGAATAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(383-564)

Competence protein (Competence)

(88-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

45.369

100

0.459
  comEC Vibrio parahaemolyticus RIMD 2210633

45.024

100

0.453
  comEC Vibrio cholerae strain A1552

44.182

100

0.447

Multiple sequence alignment