Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EL136_RS10820 Genome accession   NZ_LR134317
Coordinates   2267158..2268084 (+) Length   308 a.a.
NCBI ID   WP_042671297.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6180     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2262158..2273084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL136_RS10810 (NCTC6180_02214) amiA3 2263619..2265595 (+) 1977 WP_043026548.1 peptide ABC transporter substrate-binding protein Regulator
  EL136_RS10815 (NCTC6180_02215) amiC 2265659..2267158 (+) 1500 WP_154804370.1 ABC transporter permease Regulator
  EL136_RS10820 (NCTC6180_02216) amiD 2267158..2268084 (+) 927 WP_042671297.1 oligopeptide ABC transporter permease OppC Regulator
  EL136_RS10825 (NCTC6180_02217) amiE 2268093..2269163 (+) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  EL136_RS10830 (NCTC6180_02218) amiF 2269156..2270079 (+) 924 WP_154804371.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34546.44 Da        Isoelectric Point: 7.1547

>NTDB_id=1121307 EL136_RS10820 WP_042671297.1 2267158..2268084(+) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTILMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVVVGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1121307 EL136_RS10820 WP_042671297.1 2267158..2268084(+) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTAGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTATTTAGACAATTTTTCTCACGTAAATCAACTATTTTGATGCTGGTTATTTTGATTGCTATTA
TTTTGATGAGCTTCATCTACCCTATGTTTGCCAACTATGACTTTGGTGACGTGAGCAATATTAATGATTTTTCAAAACGT
TATATAGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATATTGATTTCGGTTATTGCAACCATCATCAACATGATTATCGGAGTTGTTGTCGGTGGTATTTGGGGTG
TTTCCAAAGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTG
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGGATTGCTTATTC
GATTCGTGTGCAAATTTTGCGTTATCGTGATTTAGAATACAATTTAGCAAGTCAGACCTTAGGAACACCGACCCATAAGA
TTGTCATTAAAAATCTTTTGCCTCAATTGGTTTCGGTGATCGTTTCGATGGTTTCCTTGCTGTTGCCGTCCTACATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGCTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACAAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCTTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.649

100

0.756
  amiD Streptococcus thermophilus LMG 18311

74.675

100

0.747
  amiD Streptococcus thermophilus LMD-9

74.675

100

0.747

Multiple sequence alignment