Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   EL136_RS09400 Genome accession   NZ_LR134317
Coordinates   1962916..1963689 (-) Length   257 a.a.
NCBI ID   WP_012678752.1    Uniprot ID   A0A7Z9D1T8
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6180     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1957916..1968689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL136_RS09375 (NCTC6180_01922) ychF 1958076..1959191 (-) 1116 WP_012514685.1 redox-regulated ATPase YchF -
  EL136_RS09380 (NCTC6180_01923) - 1959275..1959637 (-) 363 WP_012678755.1 helix-turn-helix domain-containing protein -
  EL136_RS09385 (NCTC6180_01924) - 1959761..1959958 (-) 198 WP_012514683.1 DUF951 domain-containing protein -
  EL136_RS09390 (NCTC6180_01925) dnaN 1960036..1961172 (-) 1137 WP_154804260.1 DNA polymerase III subunit beta -
  EL136_RS09395 (NCTC6180_01926) dnaA 1961329..1962681 (-) 1353 WP_014622072.1 chromosomal replication initiator protein DnaA -
  EL136_RS09400 (NCTC6180_01927) spo0J 1962916..1963689 (-) 774 WP_012678752.1 ParB/RepB/Spo0J family partition protein Regulator
  EL136_RS09405 (NCTC6180_01928) htrA 1963809..1965032 (-) 1224 WP_012516520.1 S1C family serine protease Regulator
  EL136_RS09410 (NCTC6180_01929) rlmH 1965242..1965721 (+) 480 WP_154804261.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29134.76 Da        Isoelectric Point: 9.7975

>NTDB_id=1121297 EL136_RS09400 WP_012678752.1 1962916..1963689(-) (spo0J) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
MTEILMHIPIEDIVANPYQPRLQFNQKELEELAHSIQANGLIQPIIVRKSDVFGYELVAGERRFKAAKLAGLQKIPAIVK
EISTLESMQQAIVENLQRSNLNAIEEAKAYQLLIDKNKMTHEDIATYMGKSRPYISNTIRLLQLPDVIRQAIEDGTISAG
HARALLSLSTSKEQELYFHNILDQGLSVRQIEQLVKTKHPPKKRNKHKTIFVKSLEKELSKSLGLPVALSLQKNDSGQLQ
LSFSNQEELNRIINKLL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1121297 EL136_RS09400 WP_012678752.1 1962916..1963689(-) (spo0J) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
ATGACAGAAATCCTAATGCACATTCCTATCGAGGATATTGTGGCAAATCCTTATCAACCACGTCTTCAATTTAATCAAAA
AGAGCTTGAGGAGCTGGCACATTCCATTCAGGCTAATGGTTTGATTCAACCAATCATTGTCAGAAAATCTGATGTATTTG
GCTATGAATTAGTCGCTGGAGAACGACGCTTTAAAGCAGCCAAGCTGGCAGGACTTCAAAAGATTCCAGCAATTGTTAAG
GAAATCTCTACTCTTGAGAGCATGCAGCAGGCCATCGTAGAAAACCTACAGCGCTCAAATTTAAATGCTATTGAAGAGGC
TAAGGCCTATCAATTACTTATTGATAAAAATAAGATGACCCATGAGGACATCGCGACATACATGGGAAAATCACGCCCTT
ATATCAGCAACACCATCAGACTGCTGCAATTACCAGACGTTATTAGACAAGCGATTGAGGACGGTACCATTAGCGCCGGC
CATGCAAGAGCTTTATTATCCTTGTCAACATCAAAAGAGCAGGAGCTGTATTTTCACAACATTCTGGATCAAGGCTTAAG
CGTTAGGCAAATCGAACAGCTGGTAAAGACTAAGCATCCCCCAAAAAAAAGAAACAAACATAAAACCATTTTTGTGAAGT
CTTTAGAAAAAGAGCTCTCAAAATCATTAGGATTACCTGTGGCATTGTCTCTCCAAAAAAATGACAGTGGGCAGCTGCAA
CTGTCATTTTCAAACCAAGAAGAATTGAACAGAATTATCAACAAGCTGCTTTAG

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(148-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z9D1T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

62.109

99.611

0.619

Multiple sequence alignment