Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EL143_RS11965 Genome accession   NZ_LR134313
Coordinates   2532694..2533497 (+) Length   267 a.a.
NCBI ID   WP_085416555.1    Uniprot ID   A0A448DBI4
Organism   Neisseria canis strain NCTC10296     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 2527694..2538497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL143_RS11940 (NCTC10296_02399) - 2527752..2528432 (-) 681 WP_085416550.1 GspH/FimT family pseudopilin -
  EL143_RS11945 (NCTC10296_02400) dnaB 2528588..2529997 (-) 1410 WP_085416551.1 replicative DNA helicase -
  EL143_RS11950 (NCTC10296_02401) pgeF 2530140..2530922 (-) 783 WP_085416552.1 peptidoglycan editing factor PgeF -
  EL143_RS11955 (NCTC10296_02402) - 2531045..2531515 (+) 471 WP_085416553.1 serine O-acetyltransferase -
  EL143_RS11960 (NCTC10296_02403) rluD 2531574..2532695 (-) 1122 WP_085416554.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EL143_RS11965 (NCTC10296_02404) comL 2532694..2533497 (+) 804 WP_085416555.1 outer membrane protein assembly factor BamD Machinery gene
  EL143_RS11970 (NCTC10296_02405) ubiB 2533569..2535080 (-) 1512 WP_085416556.1 ubiquinone biosynthesis regulatory protein kinase UbiB -
  EL143_RS11975 (NCTC10296_02406) nfsA 2535340..2536068 (-) 729 WP_085416557.1 oxygen-insensitive NADPH nitroreductase -
  EL143_RS11980 (NCTC10296_02407) - 2536197..2537087 (-) 891 WP_085416558.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31147.26 Da        Isoelectric Point: 7.1591

>NTDB_id=1121111 EL143_RS11965 WP_085416555.1 2532694..2533497(+) (comL) [Neisseria canis strain NCTC10296]
MKKILLIVSLGLALSGCATKGAADKDAQITQDWTVNQLYTEAQDELNSNNYTRAIKLYELLQSRFPNGVYAQQALLDTAY
AYYKDDERERALSTIQRFQHLYPNHPRMDYVLYLKGLVLFNEDQSFFNKLASQDWSDRDPKANREAYYAFEELTKRFPES
EYVADATERMAKLVDALAGNEMAIARYYINRGAYLAAINRSQKIIAQYQNTRFVEEALAIMITSYKKLNKPELAEDTARV
LQTNFPQSPYLTKDWKPDSMPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1121111 EL143_RS11965 WP_085416555.1 2532694..2533497(+) (comL) [Neisseria canis strain NCTC10296]
ATGAAAAAAATTCTTTTAATTGTTTCTTTAGGCTTGGCGTTATCAGGCTGCGCAACAAAAGGTGCAGCAGATAAAGATGC
CCAGATTACCCAAGATTGGACTGTCAACCAGCTCTACACCGAAGCGCAAGATGAGCTGAACAGCAATAATTATACGCGAG
CCATCAAATTATATGAACTGCTGCAATCGCGATTTCCTAACGGTGTATATGCCCAGCAAGCCTTGCTGGATACGGCTTAT
GCGTATTATAAAGACGACGAGCGCGAGCGCGCGCTTTCCACCATCCAGCGCTTCCAGCACCTTTATCCCAACCATCCGCG
CATGGATTATGTTCTCTATCTGAAAGGCTTGGTGCTGTTTAACGAAGACCAGTCTTTCTTCAACAAATTGGCCTCCCAAG
ACTGGTCAGACCGGGATCCGAAAGCCAACCGTGAAGCCTATTATGCTTTCGAAGAGCTTACCAAGCGCTTTCCCGAAAGC
GAATATGTAGCGGATGCCACCGAGCGCATGGCTAAACTGGTTGATGCTCTGGCCGGCAACGAAATGGCTATCGCCCGCTA
CTACATTAACCGGGGCGCCTACCTTGCCGCCATCAACCGTTCGCAAAAGATCATCGCGCAATACCAAAACACCCGCTTTG
TGGAAGAAGCTTTGGCGATTATGATCACTTCTTACAAGAAGCTGAACAAACCCGAATTGGCTGAAGACACGGCCCGCGTG
CTGCAAACCAACTTCCCGCAAAGTCCATATCTAACGAAAGACTGGAAGCCCGACAGTATGCCCTGGTGGCGCTATTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(33-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A448DBI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

73.684

99.625

0.734
  comL Neisseria meningitidis MC58

73.308

99.625

0.73

Multiple sequence alignment