Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   EL143_RS11280 Genome accession   NZ_LR134313
Coordinates   2382719..2385958 (+) Length   1079 a.a.
NCBI ID   WP_085417122.1    Uniprot ID   A0A448DAX4
Organism   Neisseria canis strain NCTC10296     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2377719..2390958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL143_RS11260 (NCTC10296_02266) pta 2378206..2379687 (-) 1482 WP_085417125.1 phosphate acetyltransferase -
  EL143_RS11265 (NCTC10296_02267) - 2379945..2380952 (+) 1008 WP_085417124.1 LLM class flavin-dependent oxidoreductase -
  EL143_RS11270 (NCTC10296_02268) rarD 2381023..2381934 (-) 912 WP_085417123.1 EamA family transporter RarD -
  EL143_RS11275 (NCTC10296_02269) - 2382082..2382546 (+) 465 WP_085417142.1 Lrp/AsnC family transcriptional regulator -
  EL143_RS11280 (NCTC10296_02270) recC 2382719..2385958 (+) 3240 WP_085417122.1 exodeoxyribonuclease V subunit gamma Machinery gene
  EL143_RS11285 (NCTC10296_02271) - 2386074..2387324 (-) 1251 WP_169709828.1 DUF2254 domain-containing protein -
  EL143_RS11290 (NCTC10296_02272) - 2387535..2388509 (+) 975 WP_085417121.1 PhoH family protein -
  EL143_RS11295 (NCTC10296_02273) - 2388558..2389157 (+) 600 WP_085417120.1 hypothetical protein -
  EL143_RS11300 (NCTC10296_02274) - 2389243..2390187 (-) 945 WP_085417119.1 bile acid:sodium symporter family protein -
  EL143_RS11305 (NCTC10296_02275) - 2390321..2390899 (-) 579 WP_085417118.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 1079 a.a.        Molecular weight: 122058.56 Da        Isoelectric Point: 5.9793

>NTDB_id=1121108 EL143_RS11280 WP_085417122.1 2382719..2385958(+) (recC) [Neisseria canis strain NCTC10296]
MLYLYQSNRLEDLAELLQAVKTRQPLRHLLASEEIIVQSQGMRRFLSRHLARETGIAANLKFSLPAGLAWRLMRDTLPDI
PALNPFSPEVMRWRLLDLFSDRHFHHAPEFALSRAALGAYLQRGGNAAYQLAGQMADIFDQYLIYRADWLDAWQAGKTLG
LGGDEAWQAELWRFLDDGSQTAPHRAALWQQFLGALDKAKLPERFFVFGIATLAPLYLELLQALSRHCDIHVFALNPSSE
YWGNIIEPAQILKSGADIDLSQSGHPLLASLGKQGRDFFDALIEAGAQTELAVYSDAAASESLLHRLQHDIQTLSLPAAA
ETPSEPDGSIRIVSAHSPLRELQILKDHILRVLNEHPGWQPHDIAVLTPNIEPYSPYIEAVFGRQTGGGQALPYSISDVK
LSRRQPLLHALEQTLELLESRFETDKVLPLLENETVLRRFGLSRQDLPLLHETVAQLNIHWGMGGEMRGGRDALFTWQQG
LDRLVLGWMMPGNTGTLWQNISALPGNLNLLEPLSRFAAFFRTLANIRRAWQRAADVPEWTQRVRRLTAHLFQPESGDQH
AVQQIEQALAQWQEEAALAGFRQALPQHTAIRHITRFLESRSEAGFLRSGITFCSMVPMRSLPFKMLCLIGLNDTDFPRN
TRASGFDLIARHPRKGDRARRDDDRYLFLEALMSAREILYLSYQGRSIQNNDLLAPSALLPELIDTLSAMTGLPPEQLSE
QMIENHPLQAFSPQYFVSDRHYTNSRSDYAEALNRPQKPVQPFFSRPLAEPETACTVSHGRLIQFWRNPVRAWLQQNLNW
REPYIDEAWDSAEPFTPEHSSRITAEYTAARRHNRDFNLTAERLAAESMLPAGELGKLWRNEFEAKAKSLDTALVQSPKL
PAAPYTLTLGKHTLEGSLGKLYRHGLIDFQNEQPNAPRKIELMLEHLIFNAVRPDGTESFQSHWLLPDDPVFLPEIPQEE
AQNLLALWLDYYVLGQTQPLPFFPKTNLAAAEAWLNPGKDDPADKAKKEAYKAYNGSKMSTGQREYTEVDLVFGSADEAP
PEQQLFWVLTEQMLVPTLSACPRLQENEGNKTEAEAEAK

Nucleotide


Download         Length: 3240 bp        

>NTDB_id=1121108 EL143_RS11280 WP_085417122.1 2382719..2385958(+) (recC) [Neisseria canis strain NCTC10296]
ATGCTCTATCTTTACCAATCCAACCGCCTTGAAGACCTTGCCGAGCTTTTACAGGCTGTCAAAACGCGCCAACCTTTGCG
CCACCTGCTCGCCTCGGAAGAAATCATCGTGCAGAGCCAGGGCATGCGGCGTTTTCTCAGCAGGCATCTGGCGCGCGAAA
CCGGCATCGCCGCCAACCTCAAATTCAGCCTGCCCGCCGGTTTGGCTTGGCGGCTGATGCGCGACACCCTGCCCGACATC
CCCGCGCTCAACCCGTTTTCCCCCGAAGTAATGCGCTGGCGGCTGCTCGACTTGTTTTCAGACAGGCATTTCCATCATGC
CCCCGAGTTTGCACTCAGCCGCGCCGCCCTCGGCGCCTACCTGCAACGGGGCGGCAATGCCGCCTACCAACTGGCCGGTC
AGATGGCCGATATTTTCGACCAATATCTGATTTACCGCGCCGACTGGCTGGATGCCTGGCAGGCAGGTAAAACGCTCGGG
CTGGGCGGCGACGAAGCCTGGCAGGCAGAGCTTTGGCGCTTTCTCGACGACGGCTCGCAAACCGCGCCGCACCGTGCCGC
CTTGTGGCAGCAGTTTCTCGGCGCATTGGATAAAGCCAAGCTGCCCGAACGCTTTTTCGTGTTCGGCATCGCCACCCTCG
CGCCGCTTTATCTGGAGCTGCTGCAAGCCCTCTCCCGACATTGCGACATCCATGTTTTCGCGCTCAACCCGAGCAGCGAA
TACTGGGGCAACATCATCGAGCCGGCACAAATCCTCAAAAGCGGCGCCGACATTGATTTAAGCCAAAGCGGCCATCCGCT
GCTGGCTTCGCTCGGCAAACAGGGGCGCGACTTTTTCGACGCGCTGATAGAAGCAGGCGCGCAAACCGAGCTGGCCGTTT
ATTCCGATGCCGCCGCGTCCGAAAGCCTGCTGCACCGCCTGCAGCACGACATCCAAACCCTCAGCCTGCCCGCCGCTGCC
GAAACACCGTCCGAACCCGACGGCAGCATCCGCATCGTGTCCGCCCACAGCCCCTTGCGCGAACTGCAGATTCTCAAAGA
CCACATTCTGCGCGTTCTAAACGAGCACCCGGGCTGGCAGCCGCACGACATCGCCGTGCTCACCCCCAACATCGAACCGT
ACAGCCCCTACATCGAAGCCGTGTTCGGCCGCCAAACCGGCGGCGGCCAAGCTTTGCCCTATTCCATTTCCGACGTCAAA
CTCAGCCGCCGCCAGCCGCTTTTACACGCGCTGGAACAAACGCTGGAATTGCTGGAAAGCCGCTTTGAAACCGACAAAGT
GCTGCCGCTTTTGGAAAACGAAACCGTGCTGCGCCGCTTCGGCCTCAGCCGCCAAGACCTGCCGCTGCTGCACGAAACCG
TGGCGCAGCTCAACATCCATTGGGGCATGGGCGGCGAGATGCGCGGCGGCAGAGATGCCTTGTTCACTTGGCAGCAGGGG
CTCGACCGCCTGGTACTCGGCTGGATGATGCCCGGCAACACCGGCACCTTGTGGCAAAACATCAGCGCCCTGCCCGGCAA
CTTAAACCTGCTCGAACCCCTGAGCCGTTTCGCCGCCTTCTTCCGCACTTTGGCAAACATCCGGCGCGCTTGGCAGCGGG
CGGCCGACGTGCCCGAGTGGACGCAACGCGTGCGCCGCCTGACGGCGCATCTGTTCCAACCCGAAAGCGGCGACCAACAT
GCCGTGCAGCAAATCGAACAAGCCCTTGCGCAATGGCAGGAAGAAGCCGCATTGGCCGGTTTCAGACAGGCATTGCCCCA
ACACACCGCCATCCGCCACATCACCCGTTTTCTCGAAAGCCGCAGCGAAGCCGGCTTCCTGCGCAGCGGCATCACCTTTT
GCAGCATGGTGCCGATGCGAAGCCTGCCCTTTAAAATGCTCTGCCTTATCGGCCTGAACGACACCGACTTCCCGCGCAAC
ACCCGCGCTTCCGGCTTCGACCTGATTGCCCGCCATCCGCGCAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCT
CTTCCTCGAAGCCCTGATGAGCGCGCGCGAAATCCTCTATCTTTCCTATCAAGGCCGCAGCATACAGAATAACGACCTGC
TCGCCCCTTCCGCCCTGCTGCCCGAGCTTATCGACACCCTCTCCGCCATGACCGGCCTGCCACCCGAACAATTGTCGGAG
CAAATGATTGAAAACCACCCGCTGCAAGCCTTTTCGCCGCAATACTTTGTTTCAGACAGGCATTACACCAACAGCCGCAG
CGACTATGCCGAAGCGCTCAACCGCCCGCAAAAGCCCGTGCAGCCGTTTTTCAGCCGACCTTTGGCTGAGCCCGAAACCG
CCTGCACCGTCAGCCACGGCCGCCTGATACAGTTTTGGCGCAATCCCGTGCGCGCGTGGCTGCAGCAAAACCTCAACTGG
CGCGAGCCTTATATTGACGAAGCTTGGGATTCCGCCGAACCCTTCACGCCCGAGCACTCAAGCCGCATCACCGCCGAATA
CACCGCCGCCCGCCGCCACAATCGGGATTTCAACCTCACCGCCGAGCGGCTGGCCGCCGAAAGCATGCTGCCCGCGGGCG
AGTTGGGCAAACTTTGGCGCAACGAATTTGAAGCCAAAGCCAAATCGCTCGATACTGCGTTGGTGCAAAGCCCCAAGCTG
CCCGCCGCGCCCTACACGCTCACGCTCGGCAAACACACGCTGGAAGGCAGCCTCGGCAAACTTTACCGCCACGGGTTGAT
TGATTTTCAAAACGAACAGCCCAACGCCCCGCGCAAAATCGAGCTGATGCTGGAGCACCTGATTTTCAACGCCGTGCGCC
CCGACGGCACGGAAAGCTTCCAAAGCCACTGGCTTCTGCCCGACGATCCGGTTTTCCTGCCCGAAATTCCGCAGGAAGAA
GCCCAAAACCTGCTCGCCCTTTGGCTGGATTACTACGTTCTCGGCCAAACCCAGCCGCTGCCCTTCTTCCCCAAAACCAA
CCTTGCCGCCGCCGAAGCATGGTTAAACCCCGGCAAAGACGATCCTGCCGACAAAGCCAAAAAAGAAGCCTATAAAGCCT
ACAACGGCTCCAAAATGAGCACCGGCCAGCGCGAATATACCGAAGTGGATCTGGTGTTCGGTTCCGCAGACGAAGCGCCG
CCGGAGCAGCAGCTTTTTTGGGTGCTCACAGAGCAAATGCTCGTTCCCACATTAAGCGCCTGCCCCCGCTTGCAGGAAAA
TGAAGGCAATAAAACCGAAGCCGAAGCCGAAGCCAAATAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(776-993)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A448DAX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

58.052

98.981

0.575

Multiple sequence alignment