Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   EL143_RS11060 Genome accession   NZ_LR134313
Coordinates   2326337..2328067 (-) Length   576 a.a.
NCBI ID   WP_085417319.1    Uniprot ID   -
Organism   Neisseria canis strain NCTC10296     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2321337..2333067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL143_RS12765 - 2321539..2321718 (+) 180 WP_232001390.1 hypothetical protein -
  EL143_RS12770 - 2321736..2321843 (-) 108 Protein_2184 IS481 family transposase -
  EL143_RS11035 (NCTC10296_02220) - 2321907..2322884 (-) 978 WP_126326771.1 IS30 family transposase -
  EL143_RS11040 (NCTC10296_02221) - 2322975..2323328 (+) 354 WP_126326773.1 helix-turn-helix domain-containing protein -
  EL143_RS11045 (NCTC10296_02222) - 2323325..2324125 (+) 801 WP_126326775.1 IS3 family transposase -
  EL143_RS11050 (NCTC10296_02223) - 2324488..2326011 (+) 1524 WP_085417318.1 sodium-dependent transporter -
  EL143_RS11055 (NCTC10296_02224) - 2326008..2326100 (+) 93 WP_040667075.1 methionine/alanine import family NSS transporter small subunit -
  EL143_RS11060 (NCTC10296_02225) recD 2326337..2328067 (-) 1731 WP_085417319.1 exodeoxyribonuclease V subunit alpha Machinery gene
  EL143_RS11065 (NCTC10296_02226) - 2328278..2329420 (+) 1143 WP_085417320.1 extracellular solute-binding protein -
  EL143_RS11070 (NCTC10296_02227) - 2329649..2330776 (+) 1128 WP_085417321.1 aminotransferase class V-fold PLP-dependent enzyme -
  EL143_RS11075 (NCTC10296_02228) - 2330921..2331601 (+) 681 WP_085417322.1 epoxyqueuosine reductase QueH -
  EL143_RS11080 (NCTC10296_02229) - 2331862..2332101 (+) 240 WP_085417323.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63064.48 Da        Isoelectric Point: 6.0377

>NTDB_id=1121106 EL143_RS11060 WP_085417319.1 2326337..2328067(-) (recD) [Neisseria canis strain NCTC10296]
MDSLMLDGFAAEAAVGLLERVAPEASGVVSPFVDKLFAALAEGHSFIWLDKHDIATMKQARPVVGGDAGSPLVLRGNKLF
LGKMWQLEQDLARQILRIAAVKPEPVDWLNASYYLADWFAESGSRDQKAAAALALLQNLMVISGGPGTGKTTTVAKLLAL
LCVNAGKLPRIALVAPTGKAAAHMAKALHRALGQFDAGAAIKAHLGHLEGQTVHRLLKFKPPYMQPAYHADNPLPLDVIV
VDEASMLDTALLLQLLSAVPDGCRVIILGDENQLPSVGAGAVLAALARQTVLKETTAQELTDLLPEQPFAVSDRPEPLAE
NIARLTISHRFGEHSGIGCLARAVVQGNVEDALAQFERFPNEIRIHNMNIDGQLETLYRLQQNYWQAVAQNDVKAAFRHQ
ADCMVLAAWRNNAEYFNQAYQAYLKKIGIIKQEEHWFAGQMLMVSRNDYTLDLFNGDIGLVLRDEESDTDALAAYFPDGD
EFRKIALSRLPECETAFAMTVHKSQGSEYKEVWLLPPMGYDLAKTAGAGLNRALLYTAITRARERFVFLGKTEAFKAACL
QEETRRSAVREMLAEG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1121106 EL143_RS11060 WP_085417319.1 2326337..2328067(-) (recD) [Neisseria canis strain NCTC10296]
ATGGATTCTTTGATGCTTGACGGTTTTGCTGCCGAAGCGGCCGTGGGCTTGCTGGAGCGGGTTGCGCCTGAAGCGAGCGG
TGTGGTGTCGCCTTTTGTCGATAAGCTTTTTGCGGCTTTGGCGGAAGGCCATTCCTTTATTTGGCTGGATAAGCATGATA
TTGCCACGATGAAACAGGCACGGCCCGTCGTAGGCGGAGATGCCGGCAGTCCGCTGGTTTTAAGGGGAAACAAGCTTTTT
TTAGGCAAAATGTGGCAGTTGGAACAGGATTTGGCACGGCAGATTCTGCGTATTGCCGCAGTGAAACCGGAGCCGGTGGA
TTGGTTGAACGCATCGTATTATCTGGCAGACTGGTTTGCAGAATCCGGCAGCAGGGATCAGAAAGCGGCGGCGGCTCTGG
CTTTGCTGCAAAACTTGATGGTCATCAGCGGCGGGCCGGGTACGGGCAAGACCACTACGGTGGCCAAACTGCTGGCTTTG
CTGTGTGTGAACGCGGGCAAATTGCCGCGCATTGCTTTGGTGGCGCCGACGGGCAAGGCTGCGGCGCATATGGCTAAAGC
GCTGCACCGTGCGCTGGGGCAGTTTGATGCCGGAGCGGCGATTAAGGCGCATCTGGGACACTTGGAAGGGCAAACGGTGC
ACCGTTTGCTTAAGTTCAAGCCGCCTTATATGCAGCCGGCTTATCATGCCGATAATCCGCTTCCGTTGGATGTGATTGTG
GTGGACGAGGCGTCGATGCTGGATACGGCGCTGTTGTTGCAGCTTTTATCCGCCGTGCCTGACGGATGCAGGGTGATTAT
ATTGGGCGATGAAAACCAGTTGCCCTCTGTGGGCGCCGGCGCGGTTTTGGCAGCGCTTGCCCGGCAAACGGTGCTAAAGG
AAACCACCGCGCAGGAGCTTACTGATTTGTTGCCGGAACAGCCGTTTGCCGTTTCAGACAGGCCTGAGCCTTTGGCTGAA
AATATCGCGCGTTTAACCATCAGCCACCGGTTCGGTGAACACAGCGGCATCGGCTGCTTAGCGCGTGCGGTTGTGCAAGG
AAATGTGGAAGATGCGCTGGCTCAGTTTGAGCGGTTTCCAAACGAAATCCGTATTCACAATATGAATATTGACGGGCAGC
TTGAAACTTTATACCGTTTGCAGCAAAACTACTGGCAGGCCGTGGCGCAAAATGATGTGAAAGCGGCTTTCAGGCATCAG
GCGGACTGTATGGTTTTGGCCGCATGGCGCAATAATGCGGAGTATTTCAATCAAGCCTATCAGGCCTATCTGAAAAAAAT
CGGCATCATCAAGCAAGAAGAGCATTGGTTTGCAGGCCAGATGCTGATGGTGAGCCGCAATGATTATACGTTGGATTTGT
TTAACGGCGACATCGGTTTGGTGCTGCGTGATGAAGAATCTGATACGGATGCGCTGGCAGCCTATTTCCCGGATGGAGAT
GAGTTTCGCAAGATCGCCTTGAGCCGCTTGCCGGAGTGCGAAACGGCGTTTGCGATGACCGTGCATAAAAGCCAGGGTTC
GGAATATAAAGAAGTGTGGCTGTTACCGCCTATGGGGTATGACTTGGCGAAAACGGCCGGAGCCGGACTGAACCGGGCTT
TGCTTTACACGGCGATTACCCGGGCTCGGGAGCGTTTTGTGTTTTTGGGCAAAACGGAAGCTTTTAAAGCTGCGTGTTTG
CAGGAAGAGACGCGCAGAAGTGCGGTGAGGGAGATGCTGGCAGAGGGGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(496-546)

AAA domain (AAA_30)

(124-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

54.902

97.396

0.535

Multiple sequence alignment