Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   EL143_RS10095 Genome accession   NZ_LR134313
Coordinates   2116060..2119665 (-) Length   1201 a.a.
NCBI ID   WP_085416339.1    Uniprot ID   A0A1X3CZ08
Organism   Neisseria canis strain NCTC10296     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2111060..2124665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL143_RS10070 (NCTC10296_02025) - 2111755..2112912 (-) 1158 WP_085416334.1 glycerate kinase -
  EL143_RS10075 (NCTC10296_02026) - 2112949..2113170 (-) 222 WP_085416335.1 hypothetical protein -
  EL143_RS10080 (NCTC10296_02027) - 2113197..2114141 (-) 945 WP_085416336.1 class I SAM-dependent methyltransferase -
  EL143_RS10085 (NCTC10296_02028) - 2114305..2115435 (+) 1131 WP_085416337.1 M14-type cytosolic carboxypeptidase -
  EL143_RS10090 (NCTC10296_02029) - 2115496..2115903 (-) 408 WP_085416338.1 hypothetical protein -
  EL143_RS10095 (NCTC10296_02030) recB 2116060..2119665 (-) 3606 WP_085416339.1 exodeoxyribonuclease V subunit beta Machinery gene
  EL143_RS10100 - 2119810..2120292 (+) 483 Protein_2006 IS1595 family transposase -
  EL143_RS12850 (NCTC10296_02032) - 2120459..2121220 (-) 762 WP_085416340.1 DUF305 domain-containing protein -
  EL143_RS10110 (NCTC10296_02033) cueR 2121628..2122017 (+) 390 WP_009116472.1 Cu(I)-responsive transcriptional regulator -
  EL143_RS10115 (NCTC10296_02034) - 2122066..2122422 (+) 357 WP_009116471.1 arsenic resistance protein -
  EL143_RS10125 (NCTC10296_02036) - 2122602..2122931 (-) 330 WP_009116470.1 hypothetical protein -
  EL143_RS10130 (NCTC10296_02037) - 2122915..2123217 (-) 303 WP_040666975.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 1201 a.a.        Molecular weight: 134555.46 Da        Isoelectric Point: 4.9696

>NTDB_id=1121104 EL143_RS10095 WP_085416339.1 2116060..2119665(-) (recB) [Neisseria canis strain NCTC10296]
MQSHIAAFDPLAIPIQGTNLIEASAGTGKTFGIAALFTRLVLLEKMSVEGILVVTFTKAATAELKTRLRSRLDEALRWLE
KPDDQKPLIDDFLRELLDKALSREQKALLVLRLKAAISQFDNAAIYTIHGFCQRLLRDYAFFCQVPFDMELETDGDERLL
TAAQDFWREQVAHDSEMARLVFEHNLTPESVLAKMRTYIGRPMLRYETNGVDLAESEAELSKVWAKVCAGLTELEAIFEQ
VYSVINKKTYSLKSMQELFAALQQDAANQCLSEKKELYKKHLPKFDLEILKSNVNKGKTLDESADKLSLLADLGRAIEAG
QVAEQAAIAALQLEFLNYMKDAVALRKQTHRERGYDDLLLDVYAALDENSPHSGALAEMVAETWRVALIDEFQDTDPLQY
GIFQNTFVRHGNPLFLVGDPKQAIYSFRGADIHAYLKAAKDADHHYTLTKNYRSHDSLIKSISLFFRQKKHPFVLKGIGY
TDVSAARADACLKPLDHALRVRWLNEDDEAALNKEVLRSRAAEYCADEIAAMLNRAAEGGLSLKTRPLQSGDIAVLVRTR
NEGSMVGAALKARGIQSVLLQRHSVFAEKEARAVAALLAFWLRPQETEALRFVLGSVLFGQTAEQLYALNQNEHQLLDYI
NAAQTALATWQKHGIYAAMQQFAARYDLEGGLLSARNERSLTNYHQIVELLAEEDERSRSPESLHQWLKAQISEAQNGKE
AGENKTLRLESDEALVKIVTIHASKGLQYPVVVCPFVWDAADYKTQDWQVISRETGSELVSALDLTDEDKNALADEELGE
RLRLLYVAMTRAEEQLTVYAAYFNGSARNTFSYLLAGSEEATRAEIEAQYAAEKKANNAEGEKKMLLQNWQRLIDNAPED
TDIAWLQGAPETAASRSQAYSENRFQAWTLPARTFEHIRHTSFTGLLRDLSAAAVPEREELQPAVDAAEAGLAQGGLAES
LSESGMVGDDVYDIHNFPRGTHAGVCLHELLEHFEFNSPASGQRPKIAETLARYSFGEEWLDAVCGMLDKAAHAELLNRL
ALADLPARNRLPEMDFMLKVEEFSPARLKAWFARPNLALPPDCIAAAQHLDFDTVKGFLSGFIDMTCIDGEGNVCVIDYK
SNYLGAGQQAYTQEAMDEAMAAHHYYLQAMIYAVAVARYLQQQNAEFDTICVRYLFLRGLGSEDGGVWRWQLDKADLQEW
L

Nucleotide


Download         Length: 3606 bp        

>NTDB_id=1121104 EL143_RS10095 WP_085416339.1 2116060..2119665(-) (recB) [Neisseria canis strain NCTC10296]
ATGCAATCCCATATCGCCGCTTTTGATCCGCTGGCCATTCCTATTCAAGGTACAAACCTTATCGAAGCTTCTGCCGGTAC
AGGCAAAACTTTTGGTATAGCTGCTTTATTTACCCGATTGGTTTTGCTGGAGAAAATGTCGGTTGAGGGTATTCTGGTGG
TAACGTTTACCAAAGCGGCTACGGCGGAATTGAAAACCCGTTTGCGTTCGCGTTTGGATGAAGCGCTCCGCTGGCTGGAA
AAGCCGGATGATCAGAAGCCTTTGATTGACGATTTTCTCCGCGAGCTGTTGGACAAAGCATTAAGTCGGGAGCAGAAAGC
GCTGTTGGTTTTGCGCTTGAAAGCGGCGATTTCGCAGTTTGATAATGCGGCGATATATACCATACACGGGTTTTGCCAGC
GTTTGTTGCGCGATTACGCATTTTTTTGCCAAGTGCCGTTTGATATGGAACTGGAAACCGACGGTGATGAGCGTTTATTA
ACGGCGGCACAGGATTTTTGGCGCGAACAGGTGGCGCATGATTCTGAGATGGCGCGTTTGGTGTTTGAACACAATCTCAC
GCCAGAATCGGTGCTTGCTAAAATGCGCACTTATATCGGCAGGCCTATGTTGCGGTATGAGACAAACGGGGTAGATTTGG
CAGAAAGCGAAGCCGAACTGTCAAAAGTATGGGCAAAAGTGTGCGCAGGATTAACGGAGCTGGAAGCAATATTTGAGCAA
GTTTATTCTGTAATCAATAAAAAAACATATTCACTGAAAAGTATGCAAGAGTTGTTTGCAGCTTTGCAGCAGGATGCGGC
AAACCAATGCCTGTCTGAAAAAAAAGAGCTGTATAAAAAGCATTTGCCGAAATTTGATTTGGAAATTTTAAAAAGCAATG
TCAACAAAGGCAAAACGCTGGACGAAAGTGCTGATAAGTTAAGCCTTTTGGCCGATTTAGGTCGGGCTATCGAAGCCGGG
CAAGTTGCCGAGCAAGCTGCTATTGCCGCATTGCAGCTGGAGTTTTTGAACTACATGAAAGACGCTGTTGCGTTGCGCAA
GCAAACACATCGGGAGCGGGGTTATGACGATTTGCTGCTGGATGTTTATGCCGCACTCGATGAAAACAGCCCGCACAGCG
GTGCTTTGGCCGAGATGGTTGCCGAGACCTGGCGGGTAGCGCTGATTGATGAATTTCAAGATACCGATCCGCTGCAATAC
GGCATTTTCCAAAATACATTTGTTCGCCACGGCAATCCTTTATTTTTGGTGGGCGATCCCAAGCAGGCGATTTACAGCTT
TAGGGGGGCGGACATTCATGCCTATCTGAAAGCGGCGAAAGATGCCGACCATCACTATACTTTAACGAAAAACTACCGCA
GCCACGACTCGCTGATAAAAAGTATCAGCCTGTTTTTCCGGCAAAAAAAACACCCTTTTGTACTCAAAGGCATCGGTTAT
ACCGATGTGTCGGCGGCGCGCGCCGATGCCTGTCTGAAGCCTTTGGATCATGCCTTGCGTGTACGCTGGTTGAATGAAGA
TGATGAAGCGGCACTGAATAAAGAAGTGTTGCGCAGCCGTGCCGCCGAATATTGTGCCGATGAAATTGCCGCCATGTTGA
ATCGGGCGGCCGAGGGTGGATTGAGCTTAAAAACGCGCCCTTTGCAATCCGGCGACATTGCCGTGTTGGTGCGCACGCGC
AACGAGGGCAGCATGGTCGGCGCGGCTCTCAAAGCGCGCGGCATACAGAGCGTGCTGCTGCAACGCCATTCCGTGTTTGC
CGAGAAAGAGGCGCGCGCGGTGGCGGCTTTGTTGGCGTTTTGGCTGCGTCCTCAGGAAACCGAGGCGTTGCGTTTTGTGT
TGGGCAGCGTTTTATTCGGCCAAACGGCGGAGCAATTATATGCGCTGAACCAAAACGAGCATCAACTGCTGGATTACATA
AACGCCGCGCAAACCGCTTTGGCTACTTGGCAGAAACACGGCATTTATGCCGCTATGCAGCAGTTTGCCGCCCGCTATGA
TTTGGAAGGCGGCCTGCTGTCGGCGCGCAATGAGCGCAGCCTGACCAATTATCATCAGATTGTCGAGTTGTTGGCCGAAG
AAGACGAACGGAGCCGATCGCCCGAGTCGCTGCACCAATGGCTGAAAGCGCAAATCAGCGAAGCGCAAAACGGTAAAGAG
GCAGGTGAAAACAAAACTTTGCGGTTGGAAAGCGATGAGGCTTTGGTGAAAATCGTAACCATTCATGCCTCGAAAGGTTT
GCAATATCCGGTGGTGGTTTGCCCGTTTGTGTGGGATGCAGCGGATTATAAAACGCAAGATTGGCAGGTTATCAGCCGTG
AAACGGGCAGCGAATTGGTGTCTGCGCTCGATCTGACCGACGAAGACAAAAACGCTTTGGCTGATGAAGAATTGGGCGAG
CGGCTGCGCCTGCTTTATGTGGCGATGACGCGTGCCGAAGAGCAGCTTACCGTTTATGCAGCTTACTTTAACGGCAGTGC
CAGAAACACGTTTTCTTATCTTTTGGCAGGCAGCGAAGAAGCAACGAGGGCAGAAATAGAAGCTCAGTATGCGGCAGAAA
AAAAGGCCAACAATGCGGAGGGAGAAAAAAAGATGCTGCTGCAAAATTGGCAGCGTTTGATAGACAATGCGCCTGAGGAT
ACCGATATTGCTTGGTTGCAGGGCGCGCCAGAAACCGCTGCCAGCCGAAGTCAGGCGTATTCTGAAAACAGGTTTCAAGC
TTGGACGCTGCCGGCACGGACGTTTGAACACATCCGGCATACCAGCTTTACCGGCTTGCTGCGTGATTTATCCGCCGCTG
CCGTGCCGGAGCGCGAAGAGCTGCAACCTGCGGTAGATGCGGCAGAAGCGGGTTTGGCGCAGGGCGGTTTGGCAGAAAGC
CTGTCTGAAAGCGGGATGGTGGGAGATGATGTTTACGATATCCACAATTTTCCGCGCGGAACCCATGCGGGCGTGTGTTT
GCATGAGCTTTTGGAGCATTTCGAGTTTAATAGCCCGGCATCCGGACAGCGGCCGAAAATAGCAGAAACGCTGGCGCGCT
ACAGTTTTGGTGAGGAATGGCTGGATGCAGTATGCGGTATGCTGGATAAGGCGGCGCATGCCGAATTGTTGAACCGTTTG
GCCTTGGCGGATTTGCCCGCACGCAACCGTTTGCCGGAAATGGATTTTATGCTCAAAGTGGAAGAGTTCAGCCCGGCCAG
GCTGAAAGCATGGTTTGCGCGCCCGAATCTCGCATTGCCGCCGGACTGCATTGCCGCCGCGCAGCATTTGGATTTCGACA
CGGTAAAAGGTTTTCTCAGCGGTTTTATCGACATGACCTGTATCGACGGCGAAGGCAATGTCTGCGTGATTGACTATAAA
TCCAATTATCTCGGCGCAGGTCAGCAAGCCTATACGCAGGAAGCGATGGATGAAGCGATGGCGGCGCACCATTATTATCT
GCAAGCCATGATTTATGCCGTGGCGGTTGCCCGCTATTTGCAGCAGCAAAATGCAGAATTCGACACCATTTGCGTGCGCT
ATTTATTTTTGCGCGGCTTGGGCAGTGAAGATGGCGGCGTATGGCGCTGGCAGCTCGACAAGGCGGATTTGCAGGAATGG
CTGTGA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-442)

UvrD-like helicase C-terminal domain (UvrD_C)

(446-819)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(984-1189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X3CZ08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

51.721

100

0.525

Multiple sequence alignment