Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   EL143_RS06110 Genome accession   NZ_LR134313
Coordinates   1303105..1305144 (+) Length   679 a.a.
NCBI ID   WP_085416607.1    Uniprot ID   -
Organism   Neisseria canis strain NCTC10296     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1298105..1310144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL143_RS06090 (NCTC10296_01219) - 1299209..1299814 (+) 606 WP_009116029.1 trimeric intracellular cation channel family protein -
  EL143_RS06095 (NCTC10296_01220) rng 1299907..1301400 (-) 1494 WP_085416604.1 ribonuclease G -
  EL143_RS12965 - 1301404..1301463 (-) 60 WP_408634068.1 hypothetical protein -
  EL143_RS06100 (NCTC10296_01221) - 1301763..1302539 (+) 777 WP_085416605.1 ferredoxin--NADP reductase -
  EL143_RS06105 (NCTC10296_01222) - 1302556..1303017 (+) 462 WP_085416606.1 HAD domain-containing protein -
  EL143_RS06110 (NCTC10296_01223) recG 1303105..1305144 (+) 2040 WP_085416607.1 ATP-dependent DNA helicase RecG Machinery gene
  EL143_RS06115 (NCTC10296_01224) - 1305336..1306610 (+) 1275 WP_085416608.1 type IV pilus biogenesis/stability protein PilW -
  EL143_RS06120 (NCTC10296_01225) - 1306694..1307266 (-) 573 WP_085416609.1 hypothetical protein -
  EL143_RS06125 (NCTC10296_01226) - 1307595..1308788 (+) 1194 WP_085416610.1 amino acid aminotransferase -
  EL143_RS06130 (NCTC10296_01227) - 1308846..1309157 (-) 312 WP_085416611.1 helix-turn-helix transcriptional regulator -
  EL143_RS06135 (NCTC10296_01228) - 1309231..1309755 (-) 525 WP_085416612.1 rhodanese-like domain-containing protein -
  EL143_RS06140 (NCTC10296_01229) - 1309837..1310031 (-) 195 WP_085416613.1 DUF2892 domain-containing protein -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 74956.90 Da        Isoelectric Point: 7.7092

>NTDB_id=1121095 EL143_RS06110 WP_085416607.1 1303105..1305144(+) (recG) [Neisseria canis strain NCTC10296]
MTPETKKLLKITDTAAQKLEKLGLHSAWDVVLHLPLRYEDETHITPIADAPLGVSCQVEGVVVRQDVQFKPRKQLIVQIR
DDAGKVLFLRFIHFYASTQKQLAQGRRVRAVGEIKHGFFGNEMIHPKIRDAENTGLSESLTPVYPTVNGLNQPTLRRIIQ
TALDAVSLHDTLPDALLSELKLPGLAESLRLLHAPPPEYSITRLADGALPAWQRLKFDELLAQQLSMRFARQKRINGQAK
PLHGDGSLSGKLLANLPFGLTGAQKRMLDEIRSDMRQPHPMHRLLQGDVGSGKTIVAALSALTAVEAGFQVAVMAPTEIL
AEQHYMKFKQWFGALGLDVAWLTGSGRKKMKEQTKALLESGEVKIAVGTHALFQDDVQFQNLGLVIVDEQHRFGVAQRLA
LKNKGQDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPVKTRLVNSLRRAEVEQFVLGTCEKGQQAYWVCPLIE
ESETLQLQTAVDTQLELQQALPMLNIGLLHGKMKAAEKAAVMEDFSAGKIHVLVATTVIEVGVDVPNASLMVIEHAERMG
LSQLHQLRGRVGRGAAASSCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFADLEED
MRLLELARDIAPKLIAGQPDIVDAHLARWLGSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=1121095 EL143_RS06110 WP_085416607.1 1303105..1305144(+) (recG) [Neisseria canis strain NCTC10296]
ATGACGCCTGAAACGAAAAAACTGCTGAAAATCACGGACACTGCTGCGCAGAAGCTGGAAAAGCTCGGCTTGCACAGCGC
GTGGGACGTGGTGCTGCATTTGCCGCTGCGTTATGAAGATGAAACGCATATTACGCCGATTGCGGATGCGCCTTTGGGCG
TGTCTTGCCAAGTTGAAGGCGTGGTAGTGCGGCAGGATGTTCAGTTTAAGCCGCGCAAGCAGCTGATTGTGCAGATTCGG
GATGATGCGGGCAAAGTGTTGTTTTTGCGGTTTATTCATTTTTATGCCAGCACCCAGAAGCAGCTGGCGCAGGGGCGGCG
GGTGCGTGCGGTGGGGGAAATCAAGCACGGTTTTTTCGGCAATGAGATGATTCACCCGAAAATCAGGGATGCGGAAAACA
CAGGCCTGTCTGAAAGCCTCACGCCGGTTTATCCCACGGTAAACGGCCTGAACCAGCCCACTTTGCGCCGCATCATTCAA
ACGGCGCTTGATGCGGTGTCGCTGCATGATACTTTGCCGGACGCTTTATTATCCGAATTGAAGCTGCCCGGCCTGGCCGA
AAGCCTGCGCCTGTTGCATGCGCCGCCGCCGGAATACAGCATCACGCGCTTGGCCGACGGTGCTTTGCCCGCGTGGCAGC
GGTTGAAGTTTGATGAATTGCTGGCGCAGCAGCTGTCCATGCGGTTTGCCCGTCAAAAGCGTATCAACGGGCAGGCGAAA
CCTTTGCACGGCGATGGCAGTCTGAGCGGTAAACTGTTGGCAAATCTGCCGTTTGGGTTGACCGGCGCGCAAAAGCGGAT
GCTGGACGAAATCCGCTCGGATATGCGGCAGCCGCACCCGATGCACCGCCTGCTGCAAGGCGATGTGGGCAGCGGGAAAA
CCATTGTGGCGGCTTTATCTGCGCTGACCGCGGTTGAAGCCGGCTTCCAAGTGGCGGTGATGGCGCCCACCGAAATTCTG
GCCGAGCAGCATTATATGAAGTTCAAACAATGGTTTGGCGCTTTGGGTTTGGACGTGGCTTGGCTCACGGGCAGCGGGCG
CAAGAAAATGAAAGAGCAAACCAAGGCTCTGCTGGAAAGCGGTGAAGTCAAGATAGCGGTCGGTACGCATGCTTTGTTTC
AAGACGATGTGCAGTTTCAGAATTTGGGCTTGGTGATTGTAGACGAGCAACACCGTTTCGGCGTGGCGCAGCGCTTGGCC
TTGAAAAACAAAGGGCAGGATGTGCACCAGCTGATGATGTCCGCCACGCCGATTCCGCGTACACTGGCCATGAGTTTTTT
TGCCGACTTGGATGTGTCGGTGATTGACGAGCTGCCGCCGGGGCGCACGCCGGTAAAAACCCGTTTGGTCAACAGCTTGC
GGCGCGCGGAAGTGGAGCAGTTTGTGCTCGGCACCTGTGAAAAAGGGCAACAGGCATATTGGGTGTGCCCCCTGATTGAG
GAAAGCGAAACCCTGCAGCTGCAAACAGCGGTGGATACGCAGCTCGAGCTGCAACAGGCCTTGCCCATGCTGAATATAGG
TTTGCTGCACGGAAAAATGAAAGCGGCGGAAAAAGCGGCCGTGATGGAAGATTTTTCCGCAGGCAAAATCCATGTGTTGG
TGGCGACTACGGTTATCGAAGTGGGTGTGGACGTGCCGAATGCCAGCCTGATGGTAATTGAACATGCCGAACGCATGGGT
TTGTCGCAGTTGCACCAGTTGCGCGGCAGAGTGGGGCGCGGCGCCGCGGCGAGCAGCTGCGTGCTCTTGTTTGCCGAGCC
TTTGAGCGAGCTGGCCAAAGCGCGCCTGAAAGTGATTTACGAGCATACCGACGGCTTTGAAATCGCCCGTCAGGATTTGA
ATATCCGCGGGCCGGGCGAGTTTCTCGGCGCGCGGCAGAGCGGGGTGCCGATGCTGCGTTTTGCTGATTTGGAAGAAGAC
ATGCGCCTGCTGGAATTGGCGCGCGATATTGCACCAAAACTGATTGCCGGGCAGCCGGACATTGTGGATGCGCATCTGGC
TAGATGGCTGGGCAGCCGCGAAGGTTATTTGGGCGTGTAG

Domains

Predicted by InterproScan.

RecG wedge domain (RecG_wedge)

(12-165)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-663)

DEAD/DEAH box helicase (DEAD)

(283-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

79.087

100

0.791

Multiple sequence alignment