Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | EL121_RS08000 | Genome accession | NZ_LR134310 |
| Coordinates | 1685037..1685585 (+) | Length | 182 a.a. |
| NCBI ID | WP_039195970.1 | Uniprot ID | - |
| Organism | Actinobacillus equuli strain NCTC8529 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1680037..1690585
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL121_RS07955 (NCTC8529_01592) | lpxK | 1680038..1681018 (+) | 981 | WP_039195962.1 | tetraacyldisaccharide 4'-kinase | - |
| EL121_RS07960 (NCTC8529_01593) | - | 1681020..1681187 (+) | 168 | WP_039195964.1 | Trm112 family protein | - |
| EL121_RS07970 (NCTC8529_01595) | gltX | 1681450..1682889 (-) | 1440 | WP_039195966.1 | glutamate--tRNA ligase | - |
| EL121_RS07995 (NCTC8529_01600) | - | 1683801..1684982 (+) | 1182 | WP_039195968.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| EL121_RS08000 (NCTC8529_01601) | pilF | 1685037..1685585 (+) | 549 | WP_039195970.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| EL121_RS08005 (NCTC8529_01602) | - | 1685661..1688000 (+) | 2340 | WP_039195972.1 | Tex family protein | - |
| EL121_RS08010 (NCTC8529_01603) | - | 1688191..1689471 (-) | 1281 | WP_039198926.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| EL121_RS08015 (NCTC8529_01604) | - | 1689583..1690101 (-) | 519 | WP_179130574.1 | SprT family zinc-dependent metalloprotease | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20686.32 Da Isoelectric Point: 6.9482
>NTDB_id=1121017 EL121_RS08000 WP_039195970.1 1685037..1685585(+) (pilF) [Actinobacillus equuli strain NCTC8529]
MNLAKFLRNLTACMLLSVLFGCSSQIPTSQTTFNRSEAVKARINLALAYLEQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQAHAERAYQQALKLSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVQSEQSYYHQADSLENIVLCAKQEPNL
AKVNEALNQLEKLDKARAAALR
MNLAKFLRNLTACMLLSVLFGCSSQIPTSQTTFNRSEAVKARINLALAYLEQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQAHAERAYQQALKLSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVQSEQSYYHQADSLENIVLCAKQEPNL
AKVNEALNQLEKLDKARAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=1121017 EL121_RS08000 WP_039195970.1 1685037..1685585(+) (pilF) [Actinobacillus equuli strain NCTC8529]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCTGTGCTGTTCGGTTGTTCTTCTCAGATTCC
TACCTCTCAAACCACTTTTAATCGCTCGGAAGCGGTTAAAGCCCGTATCAATTTAGCCTTAGCGTATCTCGAGCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTACTTACCTCATTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGCTCACGCCGAGCGAGCTTATCAGCAAGCATTGAAATTAAGTGATAATCGTCC
GGATGTATTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAGTTTGATCAGGCATATCAACAGTTTGAGCAAGCGG
TGCAAAGCGAGCAGTCTTACTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAACCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTGCGTTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCTGTGCTGTTCGGTTGTTCTTCTCAGATTCC
TACCTCTCAAACCACTTTTAATCGCTCGGAAGCGGTTAAAGCCCGTATCAATTTAGCCTTAGCGTATCTCGAGCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTACTTACCTCATTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGCTCACGCCGAGCGAGCTTATCAGCAAGCATTGAAATTAAGTGATAATCGTCC
GGATGTATTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAGTTTGATCAGGCATATCAACAGTTTGAGCAAGCGG
TGCAAAGCGAGCAGTCTTACTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAACCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTGCGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
66.489 |
100 |
0.687 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
47.368 |
93.956 |
0.445 |