Detailed information NTG1120981

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EL344_RS26605
• Genome accession: NZ_LR134309
• Coordinates: 5496941..5497813 (+)
• Length: 290 a.a.
• NCBI ID: WP_016852118.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain NCTC12903
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5491941..5502813

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL344_RS26585 (NCTC12903_05176)	-	5493324..5493788 (-)	465	WP_031642065.1	pilin	-
EL344_RS26595 (NCTC12903_05177)	pilB	5494019..5495719 (+)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EL344_RS26600 (NCTC12903_05178)	pilC	5495723..5496940 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
EL344_RS26605 (NCTC12903_05179)	pilD	5496941..5497813 (+)	873	WP_016852118.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
EL344_RS26610 (NCTC12903_05180)	coaE	5497810..5498421 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
EL344_RS26615 (NCTC12903_05181)	yacG	5498418..5498618 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
EL344_RS26620 (NCTC12903_05182)	-	5498655..5498864 (-)	210	WP_003094660.1	hypothetical protein	-
EL344_RS26625 (NCTC12903_05183)	-	5498970..5499659 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
EL344_RS26630 (NCTC12903_05184)	-	5499656..5500126 (-)	471	WP_003094664.1	hypothetical protein	-
EL344_RS26635 (NCTC12903_05185)	-	5500123..5500548 (-)	426	WP_003116252.1	GNAT family N-acetyltransferase	-
EL344_RS26640 (NCTC12903_05186)	-	5500681..5501310 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
EL344_RS26645 (NCTC12903_05187)	-	5501307..5501756 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
EL344_RS26650 (NCTC12903_05188)	-	5501782..5501952 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31845.85 Da
• Isoelectric Point: 7.7068

>NTDB_id=1120981 EL344_RS26605 WP_016852118.1 5496941..5497813(+) (pilD) [Pseudomonas aeruginosa strain NCTC12903]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=1120981 EL344_RS26605 WP_016852118.1 5496941..5497813(+) (pilD) [Pseudomonas aeruginosa strain NCTC12903]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATACTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.561	95.862	0.466