Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL115_RS02870 Genome accession   NZ_LR134307
Coordinates   563152..564954 (+) Length   600 a.a.
NCBI ID   WP_126441262.1    Uniprot ID   -
Organism   Streptococcus milleri strain NCTC10708     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 558152..569954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL115_RS02850 (NCTC10708_00576) - 559341..560510 (+) 1170 WP_126441261.1 MFS transporter -
  EL115_RS02855 (NCTC10708_00577) - 560805..561791 (+) 987 Protein_537 6-phospho-beta-glucosidase -
  EL115_RS02860 (NCTC10708_00578) celB 561785..562081 (+) 297 Protein_538 PTS cellobiose transporter subunit IIC -
  EL115_RS02865 (NCTC10708_00579) coiA 562170..563132 (+) 963 WP_003069867.1 competence protein CoiA Machinery gene
  EL115_RS02870 (NCTC10708_00580) pepF 563152..564954 (+) 1803 WP_126441262.1 oligoendopeptidase F Regulator
  EL115_RS02875 (NCTC10708_00581) - 564955..565638 (+) 684 WP_006270129.1 O-methyltransferase -
  EL115_RS02880 (NCTC10708_00582) prsA 565745..566683 (+) 939 WP_003069861.1 peptidylprolyl isomerase PrsA -
  EL115_RS02885 - 566821..567393 (+) 573 WP_080983117.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69384.68 Da        Isoelectric Point: 4.6883

>NTDB_id=1120881 EL115_RS02870 WP_126441262.1 563152..564954(+) (pepF) [Streptococcus milleri strain NCTC10708]
MAKQRNEIEEKYTWDLTTIFPTDEAFEMELAQVSKELKEASHLAGHLLDSADSLLKTTDIQMDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMATYSEFGQVFAFYEPEFMAITDEQYQAFLAEKPELQIYQHFFDKLLQKKPHILSQREEELLAGA
GEIFSAAGDTFGILDNADIVFPIVHDEEGNEVQLTHGNYISLVESKNRTVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSANFIPESVYESLVSAVNKHLPLLHRYVQLRAKILGISDLKMYDVYTPLSEIDYKFTYEAALI
KAEEVLAILGDDYLNRVKKAFSERWIDVCENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVDDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNNLYADLNEKYYGLTKEDNPQIQYEWARIPHFYYDYYVFQYATGFSAASALADKIVNGTQEDKEKYLHYLRAGNSDYPL
NVIKKAGVDMEKEDYLNAAFTVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1120881 EL115_RS02870 WP_126441262.1 563152..564954(+) (pepF) [Streptococcus milleri strain NCTC10708]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGATTTAACGACGATTTTCCCAACGGATGAAGCGTTTGA
AATGGAATTAGCGCAAGTTTCAAAGGAATTAAAAGAAGCTAGTCATTTAGCAGGTCATCTTTTGGATTCAGCCGATAGCC
TTTTAAAAACGACAGACATCCAAATGGATTTAATGCGTCGTATTGAAAAGCTTTATTCCTATGCTCACATGAAAAATGAC
CAAGATACGCGTGTGGCAAAATATCAAGAGTATCAAGCCAAGGGCATGGCTACTTATAGCGAGTTCGGGCAGGTGTTTGC
TTTCTATGAGCCAGAATTTATGGCAATTACAGATGAACAGTATCAGGCTTTCTTAGCTGAAAAACCTGAATTGCAAATCT
ATCAGCACTTCTTTGACAAGTTATTGCAAAAGAAACCTCACATCCTTTCTCAACGCGAGGAAGAATTGTTGGCAGGTGCT
GGTGAAATTTTTAGTGCTGCTGGTGATACTTTTGGAATTTTGGACAATGCCGATATCGTCTTTCCAATTGTACATGATGA
AGAAGGCAATGAAGTACAATTGACGCATGGAAATTACATTAGCTTAGTGGAGTCAAAAAATCGTACAGTCCGTAAGGAAG
CTTATGAAGCACTTTATAGCGTTTATGAACAATATCAACATACTTATGCTAAGACACTCCAAACAAATGTTAAGGTGCAT
AATTACAATGCAAAAGTACGTAAGTTTTCTTCGGCACGCGAAGCAGCCTTGTCTGCTAACTTTATTCCAGAAAGTGTTTA
TGAGAGCTTGGTGTCTGCAGTCAACAAACATTTACCGCTCTTACATCGCTATGTTCAGTTGCGAGCTAAGATTTTAGGCA
TTTCAGATCTCAAGATGTATGACGTTTATACACCGCTATCAGAGATAGATTATAAATTTACCTATGAAGCAGCTTTGATA
AAAGCAGAAGAAGTTTTAGCAATTCTTGGAGATGATTATCTTAACCGAGTGAAAAAAGCCTTTTCAGAGCGTTGGATTGA
TGTTTGTGAGAATCAAGGTAAACGGTCAGGGGCTTATTCTGGTGGCTCTTACGATACTAATGCTTTTATGTTGCTGAATT
GGCAAGATACCTTAGATAATCTCTTCACCTTGGTTCATGAAACGGGTCACAGTATGCATTCTAGCTATACTCGTGAAACA
CAGCCTTATGTTTATGGTGATTATTCTATTTTCTTAGCTGAGATTGCTTCTACTACCAATGAAAATATACTGACGGAGAA
ATTATTGGAAGAAGTAGATGACGATCAAACTCGTTTTGCGATTCTGAATCATTTCTTGGATGGCTTCCGCGGAACTGTTT
TCCGCCAAACTCAATTTGCTGAGTTTGAGCATGCTATCCATAAGGCTGATCAAGAAGGTCAAGTCTTAACTAGTGAATTT
TTGAATAATTTATACGCAGATTTGAACGAAAAATATTATGGCTTGACGAAAGAAGATAATCCACAAATTCAATATGAATG
GGCACGGATTCCGCATTTTTACTATGACTATTATGTATTTCAATATGCGACTGGTTTTTCAGCAGCATCTGCTTTAGCTG
ATAAAATTGTCAATGGAACACAAGAAGATAAAGAGAAATATCTCCATTATCTCAGAGCAGGAAATTCTGATTATCCGCTG
AATGTCATTAAAAAAGCTGGTGTTGATATGGAAAAAGAAGACTATCTCAATGCTGCCTTTACAGTCTTTGAACGTCGTCT
TGATGAATTTGAAGCACTTGTAGAAAAGTTGGGCTTAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.792

99.333

0.683

Multiple sequence alignment