Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   EL119_RS06500 Genome accession   NZ_LR134305
Coordinates   1269487..1269933 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC1803     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1264487..1274933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL119_RS06470 (NCTC1803_01226) gcvPA 1265414..1266760 (-) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  EL119_RS06475 (NCTC1803_01227) gcvT 1266780..1267871 (-) 1092 WP_000093343.1 glycine cleavage system aminomethyltransferase GcvT -
  EL119_RS06480 - 1268029..1268553 (-) 525 WP_001015120.1 shikimate kinase -
  EL119_RS06485 - 1268543..1268689 (-) 147 WP_001789879.1 hypothetical protein -
  EL119_RS06490 (NCTC1803_01229) comGF 1268786..1269283 (-) 498 WP_078061106.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL119_RS06495 (NCTC1803_01230) comGE 1269201..1269500 (-) 300 WP_000844409.1 hypothetical protein Machinery gene
  EL119_RS06500 (NCTC1803_01231) comGD 1269487..1269933 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL119_RS06505 (NCTC1803_01232) comGC 1269911..1270222 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  EL119_RS06510 (NCTC1803_01233) comGB 1270236..1271306 (-) 1071 WP_000776418.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL119_RS06515 (NCTC1803_01234) comGA 1271278..1272252 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  EL119_RS06520 (NCTC1803_01235) - 1272304..1272927 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  EL119_RS06525 (NCTC1803_01236) - 1272924..1273253 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  EL119_RS06530 (NCTC1803_01237) - 1273253..1274239 (-) 987 WP_000161315.1 ROK family glucokinase -
  EL119_RS06535 - 1274236..1274439 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=1120818 EL119_RS06500 WP_001796473.1 1269487..1269933(-) (comGD) [Staphylococcus aureus strain NCTC1803]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1120818 EL119_RS06500 WP_001796473.1 1269487..1269933(-) (comGD) [Staphylococcus aureus strain NCTC1803]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment