Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EL119_RS04925 Genome accession   NZ_LR134305
Coordinates   930468..931340 (+) Length   290 a.a.
NCBI ID   WP_000620182.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC1803     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 925468..936340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL119_RS04900 (NCTC1803_00931) - 925614..926381 (+) 768 WP_000176392.1 ribonuclease HII -
  EL119_RS04905 (NCTC1803_00932) sucC 926490..927656 (+) 1167 WP_001020804.1 ADP-forming succinate--CoA ligase subunit beta -
  EL119_RS04910 (NCTC1803_00933) sucD 927678..928586 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  EL119_RS04915 (NCTC1803_00934) - 928872..929024 (+) 153 Protein_925 cell wall hydrolase -
  EL119_RS04920 (NCTC1803_00935) fmhC 929052..930296 (+) 1245 WP_000672856.1 FemA/FemB family glycyltransferase FmhC -
  EL119_RS04925 (NCTC1803_00936) dprA 930468..931340 (+) 873 WP_000620182.1 DNA-processing protein DprA Machinery gene
  EL119_RS04930 (NCTC1803_00937) topA 931514..933466 (+) 1953 WP_126498383.1 type I DNA topoisomerase -
  EL119_RS04935 (NCTC1803_00938) trmFO 933622..934929 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  EL119_RS04940 (NCTC1803_00939) xerC 935346..936242 (+) 897 WP_001015610.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=1120811 EL119_RS04925 WP_000620182.1 930468..931340(+) (dprA) [Staphylococcus aureus strain NCTC1803]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1120811 EL119_RS04925 WP_000620182.1 930468..931340(+) (dprA) [Staphylococcus aureus strain NCTC1803]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGACATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACGAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCGCCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGTAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986

Multiple sequence alignment