Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   EL119_RS03585 Genome accession   NZ_LR134305
Coordinates   668486..669472 (+) Length   328 a.a.
NCBI ID   WP_000959280.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC1803     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 663486..674472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL119_RS03560 (NCTC1803_00677) opp4B 663698..664660 (+) 963 WP_000593670.1 oligopeptide ABC transporter permease -
  EL119_RS03565 (NCTC1803_00678) opp4C 664672..665553 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  EL119_RS03570 (NCTC1803_00679) trpS 665595..666584 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  EL119_RS03575 (NCTC1803_00680) spxA 666880..667275 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  EL119_RS03580 (NCTC1803_00681) mecA 667646..668365 (+) 720 WP_001217736.1 adaptor protein MecA -
  EL119_RS03585 (NCTC1803_00682) coiA 668486..669472 (+) 987 WP_000959280.1 competence protein CoiA Machinery gene
  EL119_RS03590 (NCTC1803_00683) pepF 669520..671328 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  EL119_RS03595 (NCTC1803_00686) yjbH 671788..672594 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  EL119_RS03600 (NCTC1803_00687) - 672617..672982 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  EL119_RS03605 (NCTC1803_00688) - 673086..673679 (-) 594 WP_000224616.1 CYTH domain-containing protein -
  EL119_RS03610 (NCTC1803_00689) - 673865..674212 (+) 348 WP_001242107.1 hypothetical protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38720.32 Da        Isoelectric Point: 9.6486

>NTDB_id=1120809 EL119_RS03585 WP_000959280.1 668486..669472(+) (coiA) [Staphylococcus aureus strain NCTC1803]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMMQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKGNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLKISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1120809 EL119_RS03585 WP_000959280.1 668486..669472(+) (coiA) [Staphylococcus aureus strain NCTC1803]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATGCAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAGGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAAAATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.341

100

0.963

  coiA Staphylococcus aureus N315

96.341

100

0.963


Multiple sequence alignment