Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   EL116_RS09770 Genome accession   NZ_LR134304
Coordinates   1973923..1974966 (-) Length   347 a.a.
NCBI ID   WP_001017131.1    Uniprot ID   A0A0D1IMN4
Organism   Staphylococcus schweitzeri strain NCTC13712     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1968923..1979966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL116_RS09740 (NCTC13712_01898) - 1969344..1970591 (-) 1248 WP_047550456.1 aminopeptidase -
  EL116_RS09745 (NCTC13712_01899) - 1970603..1970803 (-) 201 WP_047427482.1 DUF1128 domain-containing protein -
  EL116_RS09750 (NCTC13712_01900) - 1970950..1971414 (+) 465 WP_047427479.1 low molecular weight protein-tyrosine-phosphatase -
  EL116_RS09755 (NCTC13712_01901) - 1971421..1971696 (+) 276 WP_000428174.1 YtxH domain-containing protein -
  EL116_RS09760 (NCTC13712_01902) - 1971975..1973192 (+) 1218 WP_047550459.1 YihY/virulence factor BrkB family protein -
  EL116_RS09765 (NCTC13712_01903) vraR 1973304..1973933 (-) 630 WP_000153529.1 two-component system response regulator VraR Regulator
  EL116_RS09770 (NCTC13712_01904) vraS 1973923..1974966 (-) 1044 WP_001017131.1 sensor histidine kinase Regulator
  EL116_RS09775 (NCTC13712_01905) liaF 1974963..1975664 (-) 702 WP_000149061.1 cell wall-active antibiotics response protein LiaF -
  EL116_RS09780 (NCTC13712_01906) - 1975679..1976065 (-) 387 WP_047427468.1 hypothetical protein -
  EL116_RS09785 (NCTC13712_01907) map 1976286..1977044 (-) 759 WP_047450567.1 type I methionyl aminopeptidase -
  EL116_RS09790 (NCTC13712_01908) - 1977572..1978558 (+) 987 WP_047531879.1 FUSC family protein -
  EL116_RS09795 (NCTC13712_01909) - 1978719..1979132 (-) 414 WP_047550463.1 hypothetical protein -
  EL116_RS09800 - 1979168..1979269 (-) 102 WP_047550466.1 hypothetical protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 40044.52 Da        Isoelectric Point: 6.0577

>NTDB_id=1120793 EL116_RS09770 WP_001017131.1 1973923..1974966(-) (vraS) [Staphylococcus schweitzeri strain NCTC13712]
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKT
QIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEI
QDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEDSYDD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1120793 EL116_RS09770 WP_001017131.1 1973923..1974966(-) (vraS) [Staphylococcus schweitzeri strain NCTC13712]
ATGAACCATTATATTAGAACAATTGGTTCGATGCTAATCTTAGTGTACAGCATGTTGGCAGCATTTCTTTTTATAGATAA
AGTTTTCGTCAATATCATTTATTTTCAAGGCATGTTTTATACACAAATATTTGGGATTCCAGTCTTTTTATTTTTAAATC
TCATTATAATTTTGCTGTGCATCATCGTTGGATCAGTGCTCGCATACAAAATCAATCAACAAAATGATTGGATTAAGACG
CAAATTGAGCGTTCGATGGAAGGTGAGACAGTAGGTATTAATGATCAAAATATAGAAATTTATAGTGAGACATTAGATTT
ATATCATACGTTAGTACCTTTAAATCAAGAATTGCATAAGTTGCGACTTAAAACTCAAAACTTAACCAATGAAAATTATA
ATATTAATGATGTGAAAGTTAAAAAGATTATTGAAGATGAACGTCAACGACTAGCACGAGAACTTCACGATTCTGTTAGT
CAGCAACTTTTTGCGGCAAGTATGATGCTATCTGCTATCAAAGAAACGAAGTTAGAACCACCATTAGATCAACAAATACC
TATTTTAGAGAAAATGGTTCAAGATTCGCAATTAGAAATGCGAGCGCTGTTGTTACATTTAAGACCACTCGGTTTGAAAG
ATAAGTCATTAGGTGAAGGTATTAAAGATTTAGTTATTGATTTACAAAAGAAAGTACCAATGAAAGTTGTGCATGAAATA
CAAGATTTTAAAGTGCCAAAAGGTATTGAGGATCATTTGTTTAGAATTACGCAAGAAGCAATATCTAATACTTTGAGACA
TTCAAATGGCACGAAAGTAACTGTAGAATTATTTAATAAAGATGATTATTTATTGTTAAGGATTCAAGATAATGGTAAAG
GTTTTAATGTAGATGAAAAATTAGAACAAAGCTATGGACTTAAAAATATGCGTGAAAGAGCTTTGGAAATTGGTGCAACG
TTCCATATTGTATCACTACCAGATTCAGGTACACGTATTGAGGTGAAAGCACCTCTAAATAAGGAGGATTCGTATGACGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0D1IMN4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

100

100

1


Multiple sequence alignment