Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EL116_RS06160 Genome accession   NZ_LR134304
Coordinates   1242526..1243398 (+) Length   290 a.a.
NCBI ID   WP_047549517.1    Uniprot ID   -
Organism   Staphylococcus schweitzeri strain NCTC13712     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1237526..1248398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL116_RS06140 (NCTC13712_01190) sucC 1237635..1238801 (+) 1167 WP_001020805.1 ADP-forming succinate--CoA ligase subunit beta -
  EL116_RS06145 (NCTC13712_01191) sucD 1238823..1239731 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  EL116_RS06150 (NCTC13712_01192) - 1239961..1241079 (+) 1119 WP_047549523.1 LysM peptidoglycan-binding domain-containing protein -
  EL116_RS06155 (NCTC13712_01193) fmhC 1241107..1242351 (+) 1245 WP_047549520.1 FemA/FemB family glycyltransferase FmhC -
  EL116_RS06160 (NCTC13712_01194) dprA 1242526..1243398 (+) 873 WP_047549517.1 DNA-processing protein DprA Machinery gene
  EL116_RS06165 (NCTC13712_01195) topA 1243572..1245647 (+) 2076 WP_078101703.1 type I DNA topoisomerase -
  EL116_RS06170 (NCTC13712_01196) trmFO 1245804..1247111 (+) 1308 WP_047549514.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33632.25 Da        Isoelectric Point: 9.6247

>NTDB_id=1120771 EL116_RS06160 WP_047549517.1 1242526..1243398(+) (dprA) [Staphylococcus schweitzeri strain NCTC13712]
MIRQFLLRLYWAQFSTKQIYQFLMAYPNVIKEDCGKKDRYLCEWVKREENVHLLRKYYAFIKLDHNVIIKELQKLKVSYM
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNRFHLAVVGARDSTSYTLQALDFLLSHDRSKCLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDILEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1120771 EL116_RS06160 WP_047549517.1 1242526..1243398(+) (dprA) [Staphylococcus schweitzeri strain NCTC13712]
TTGATTAGACAATTTTTGCTTAGATTATACTGGGCGCAATTTTCGACTAAACAAATTTATCAATTTTTAATGGCGTATCC
TAATGTAATTAAAGAGGATTGCGGAAAAAAAGATAGATATTTATGTGAGTGGGTGAAAAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGTAATTATTAAAGAACTACAAAAATTAAAAGTGAGTTATATG
ACCTATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCACTTCTTCTTTTCTATAAAGGGAACAT
AAAATTAATAAATAATAGGTTTCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACTCTACAGGCTTTAGATT
TTTTATTATCACATGATAGAAGTAAATGTTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGCACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCCCATACACCAATTGCTAAATATAGATTTC
CTGAACGCAATAGAATTATCAGTGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGCGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTATATGTTTTACCAGGGTCAATGTTTAATCCAATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTTTTAAACGCAAACGATATATTAGAGGACTACTACATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

92.414

100

0.924
  dprA Staphylococcus aureus N315

92.069

100

0.921

Multiple sequence alignment