Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   EL116_RS04890 Genome accession   NZ_LR134304
Coordinates   976961..977947 (+) Length   328 a.a.
NCBI ID   WP_047551220.1    Uniprot ID   A0A2K4AK68
Organism   Staphylococcus schweitzeri strain NCTC13712     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 971961..982947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL116_RS04870 (NCTC13712_00936) - 972337..973959 (+) 1623 WP_047551217.1 peptide ABC transporter substrate-binding protein -
  EL116_RS04875 (NCTC13712_00937) trpS 974077..975066 (-) 990 WP_047531310.1 tryptophan--tRNA ligase -
  EL116_RS04880 (NCTC13712_00938) spxA 975360..975755 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  EL116_RS04885 (NCTC13712_00939) mecA 976121..976840 (+) 720 WP_001217728.1 adaptor protein MecA -
  EL116_RS04890 (NCTC13712_00940) coiA 976961..977947 (+) 987 WP_047551220.1 competence protein CoiA Machinery gene
  EL116_RS04895 (NCTC13712_00941) pepF 977995..979803 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  EL116_RS04900 (NCTC13712_00944) yjbH 980262..981068 (-) 807 WP_031787339.1 protease adaptor protein YjbH -
  EL116_RS04905 (NCTC13712_00945) - 981091..981456 (-) 366 WP_047424698.1 truncated hemoglobin YjbI -
  EL116_RS04910 (NCTC13712_00946) - 981576..982169 (-) 594 WP_047551226.1 CYTH domain-containing protein -
  EL116_RS04915 (NCTC13712_00947) - 982353..982700 (+) 348 WP_047424702.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38836.21 Da        Isoelectric Point: 9.4591

>NTDB_id=1120769 EL116_RS04890 WP_047551220.1 976961..977947(+) (coiA) [Staphylococcus schweitzeri strain NCTC13712]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLENKQIYKFDLLQSLGGNKYFAYKTKDSISELYNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKFVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNIYSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1120769 EL116_RS04890 WP_047551220.1 976961..977947(+) (coiA) [Staphylococcus schweitzeri strain NCTC13712]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTGGAAAATAAGCAAATATATAAATTTGATCTATTACAAAGTTTAGGTGGCAATAAGTATTTTGCGTA
TAAGACGAAAGACAGTATTAGTGAGTTGTATAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCGACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTTGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTATTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K4AK68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

92.988

100

0.93
  coiA Staphylococcus aureus MW2

92.988

100

0.93

Multiple sequence alignment