Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   EL116_RS02590 Genome accession   NZ_LR134304
Coordinates   536799..537356 (+) Length   185 a.a.
NCBI ID   WP_398572883.1    Uniprot ID   -
Organism   Staphylococcus schweitzeri strain NCTC13712     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 531799..542356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL116_RS02565 (NCTC13712_00480) cysE 533001..533648 (+) 648 WP_072291959.1 serine O-acetyltransferase -
  EL116_RS02570 (NCTC13712_00481) cysS 533632..535032 (+) 1401 WP_047550195.1 cysteine--tRNA ligase -
  EL116_RS02575 (NCTC13712_00482) - 535025..535429 (+) 405 WP_047550189.1 Mini-ribonuclease 3 -
  EL116_RS02580 (NCTC13712_00483) rlmB 535437..536183 (+) 747 WP_047550219.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EL116_RS02585 (NCTC13712_00484) - 536183..536707 (+) 525 WP_047550186.1 NYN domain-containing protein -
  EL116_RS02590 (NCTC13712_00485) sigH 536799..537356 (+) 558 WP_398572883.1 sigma-70 family RNA polymerase sigma factor Regulator
  EL116_RS02595 rpmG 537472..537615 (+) 144 WP_014373786.1 50S ribosomal protein L33 -
  EL116_RS02600 (NCTC13712_00486) secE 537671..537853 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  EL116_RS02605 (NCTC13712_00487) nusG 537866..538414 (+) 549 WP_047428277.1 transcription termination/antitermination protein NusG -
  EL116_RS02610 (NCTC13712_00488) rplK 538595..539017 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  EL116_RS02615 (NCTC13712_00489) rplA 539225..539917 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  EL116_RS02625 (NCTC13712_00491) rplJ 540189..540689 (+) 501 WP_047428285.1 50S ribosomal protein L10 -
  EL116_RS02630 (NCTC13712_00492) rplL 540731..541099 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  EL116_RS02635 (NCTC13712_00494) - 541422..542030 (+) 609 WP_047532201.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 22367.23 Da        Isoelectric Point: 9.7609

>NTDB_id=1120761 EL116_RS02590 WP_398572883.1 536799..537356(+) (sigH) [Staphylococcus schweitzeri strain NCTC13712]
MSPHNNVKKVSNIVDENEFEKLITDLKPLIVRRMKRFGFKFHDLEDLYQEILIKIYRATKTFDFNGEQPFVNYVQCLITS
VKYDYLRKCLASSKRMDNLVNEYKVIYPCALKHHDIERNYLNKLTVTELICQFKRLSAFEKEVMYFICEQYKPREIARLM
NVKEKTIYNAIQRCKSKIRQHFKMN

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1120761 EL116_RS02590 WP_398572883.1 536799..537356(+) (sigH) [Staphylococcus schweitzeri strain NCTC13712]
ATATCACCGCACAATAATGTTAAAAAAGTCAGCAATATAGTTGACGAGAATGAATTTGAAAAGTTAATAACGGATTTGAA
ACCATTAATTGTTCGACGTATGAAAAGGTTTGGCTTTAAATTTCATGATTTGGAAGACTTATATCAAGAGATACTTATAA
AGATATATAGGGCAACTAAAACATTTGATTTTAATGGGGAACAACCATTTGTTAATTATGTTCAATGTTTAATCACTTCT
GTTAAATACGATTATTTAAGGAAGTGTTTAGCATCTTCTAAAAGAATGGATAATTTAGTAAATGAATATAAAGTTATATA
TCCATGTGCATTAAAGCATCATGACATTGAAAGAAACTATTTAAATAAACTAACTGTCACAGAGTTAATTTGTCAGTTTA
AACGTTTAAGTGCATTTGAAAAGGAAGTAATGTATTTTATATGTGAACAATATAAGCCAAGAGAGATTGCTCGATTGATG
AATGTTAAAGAAAAAACTATTTATAATGCAATTCAACGTTGTAAAAGTAAAATAAGACAGCATTTTAAAATGAATTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(22-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

69.022

99.459

0.686
  sigH Staphylococcus aureus MW2

67.935

99.459

0.676

Multiple sequence alignment