Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   EL096_RS07000 Genome accession   NZ_LR134294
Coordinates   1305488..1306108 (-) Length   206 a.a.
NCBI ID   WP_050203505.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC12977     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1300488..1311108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL096_RS06975 (NCTC12977_01358) recA 1300866..1302032 (-) 1167 WP_054387479.1 recombinase RecA Machinery gene
  EL096_RS06980 (NCTC12977_01359) cinA 1302087..1303343 (-) 1257 WP_000642707.1 competence/damage-inducible protein A Machinery gene
  EL096_RS06985 (NCTC12977_01360) brpA 1303427..1304443 (-) 1017 WP_000239282.1 biofilm formation/cell division transcriptional regulator BrpA -
  EL096_RS06990 (NCTC12977_01361) - 1304451..1304969 (-) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  EL096_RS06995 (NCTC12977_01362) tsaE 1304959..1305402 (-) 444 WP_000288230.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  EL096_RS07000 (NCTC12977_01363) comM 1305488..1306108 (-) 621 WP_050203505.1 hypothetical protein Regulator
  EL096_RS07010 (NCTC12977_01364) - 1306491..1307354 (-) 864 WP_001844931.1 helix-turn-helix domain-containing protein -
  EL096_RS07015 (NCTC12977_01365) - 1307543..1307713 (+) 171 WP_000742180.1 PhrA family quorum-sensing system peptide -
  EL096_RS07020 (NCTC12977_01366) - 1308163..1310178 (+) 2016 WP_000732386.1 DUF1430 domain-containing protein -
  EL096_RS07025 (NCTC12977_01367) - 1310180..1310812 (+) 633 WP_000571415.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23534.68 Da        Isoelectric Point: 10.1254

>NTDB_id=1120561 EL096_RS07000 WP_050203505.1 1305488..1306108(-) (comM) [Streptococcus pneumoniae strain NCTC12977]
MKSMRILFLLALIQISLSSCFLWKECILSFKQSTAFFIGSMVFVSGICAGVNYLYTRKQEVHSVLASKKSVKLFYSMLLL
INLLGAVLVLSDNLFIKNTLQQELVDFLLPSFFFLFGLDLLIFLPLKKYVRDFLAMLDRKKTVLVTILATLLFLRNPITI
VSLLIYIGLGLFFAAYLVPNSVKKEVSFYGHIFRDLVLVIVTLIFF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1120561 EL096_RS07000 WP_050203505.1 1305488..1306108(-) (comM) [Streptococcus pneumoniae strain NCTC12977]
ATGAAATCAATGAGAATCTTATTTTTGTTAGCTTTAATTCAAATCAGTTTGAGTAGCTGTTTCCTATGGAAGGAATGCAT
CTTGTCCTTTAAACAAAGTACAGCTTTTTTCATCGGAAGCATGGTTTTCGTTTCAGGAATCTGTGCTGGAGTAAATTATC
TTTATACCCGTAAGCAAGAAGTCCATAGTGTCCTAGCCAGTAAGAAGTCGGTGAAGCTTTTTTACAGTATGTTACTCTTA
ATTAATTTGTTAGGAGCTGTTCTTGTTTTGTCAGATAACTTGTTCATCAAAAATACGCTGCAGCAAGAATTAGTTGACTT
TTTATTGCCATCCTTCTTTTTCCTATTTGGGCTAGATTTGCTGATTTTTTTACCCTTGAAAAAATACGTGCGCGATTTTC
TTGCTATGCTAGACAGAAAAAAGACAGTGTTGGTGACTATTTTAGCAACACTTCTTTTCTTAAGAAATCCAATAACCATT
GTCTCACTTCTGATTTATATTGGACTGGGCTTGTTTTTTGCAGCCTATCTTGTCCCAAATTCGGTTAAGAAGGAAGTTTC
CTTTTATGGTCATATTTTCCGAGATCTTGTATTGGTCATTGTTACGCTCATTTTCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

99.515

100

0.995
  comM Streptococcus pneumoniae R6

99.515

100

0.995
  comM Streptococcus pneumoniae TIGR4

99.515

100

0.995
  comM Streptococcus mitis NCTC 12261

38.974

94.66

0.369
  comM Streptococcus mitis SK321

38.974

94.66

0.369

Multiple sequence alignment