Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   EL097_RS10825 Genome accession   NZ_LR134293
Coordinates   520923..521024 (-) Length   33 a.a.
NCBI ID   WP_201281440.1    Uniprot ID   -
Organism   Streptococcus canis strain NCTC12191     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 515923..526024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL097_RS02675 (NCTC12191_00524) - 517118..518893 (-) 1776 WP_003046018.1 acyltransferase family protein -
  EL097_RS02680 (NCTC12191_00525) - 518890..519291 (-) 402 WP_003046016.1 MORN repeat-containing protein -
  EL097_RS02685 (NCTC12191_00526) - 519308..519751 (-) 444 WP_129544930.1 low molecular weight protein-tyrosine-phosphatase -
  EL097_RS02690 (NCTC12191_00527) ruvB 519892..520890 (-) 999 WP_003046011.1 Holliday junction branch migration DNA helicase RuvB -
  EL097_RS10825 (NCTC12191_00528) comS 520923..521024 (-) 102 WP_201281440.1 quorum-sensing system DWW-type pheromone Regulator
  EL097_RS02695 (NCTC12191_00529) comR 521111..522022 (-) 912 WP_003046007.1 helix-turn-helix domain-containing protein Regulator
  EL097_RS02700 (NCTC12191_00530) purB 522159..523451 (-) 1293 WP_003046005.1 adenylosuccinate lyase -
  EL097_RS02705 (NCTC12191_00531) purK 523969..525039 (-) 1071 WP_003046003.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  EL097_RS02710 (NCTC12191_00532) purE 525026..525517 (-) 492 WP_003046002.1 5-(carboxyamino)imidazole ribonucleotide mutase -

Sequence

Protein


Download         Length: 33 a.a.        Molecular weight: 3962.88 Da        Isoelectric Point: 10.7919

>NTDB_id=1120524 EL097_RS10825 WP_201281440.1 520923..521024(-) (comS) [Streptococcus canis strain NCTC12191]
MMFKKFKPFLLIAAVIAFKVARVMNEFDWWNLG

Nucleotide


Download         Length: 102 bp        

>NTDB_id=1120524 EL097_RS10825 WP_201281440.1 520923..521024(-) (comS) [Streptococcus canis strain NCTC12191]
ATGATGTTTAAAAAATTCAAACCATTTTTGTTAATAGCTGCGGTAATTGCTTTTAAAGTAGCTCGTGTGATGAATGAATT
TGATTGGTGGAATCTAGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

84.375

96.97

0.818
  comS Streptococcus pyogenes MGAS8232

41.935

93.939

0.394

Multiple sequence alignment